Project name: query_structure

Status: done

Started: 2026-03-16 22:54:42
Settings
Chain sequence(s) A: ARPKDRPSYCNLPADSGSGTKPEQRIYYNSAKKQCVTFTYNGKGGNGNNFSRTNDCRQTCQYPVG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:53)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:53)
Show buried residues

Minimal score value
-3.9338
Maximal score value
1.4664
Average score
-1.3803
Total score value
-89.7219

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A -0.9103
2 R A -2.3131
3 P A -2.5987
4 K A -3.6943
5 D A -3.4743
6 R A -3.1291
7 P A -1.6870
8 S A -0.7460
9 Y A 0.5692
10 C A 0.0000
11 N A -0.9072
12 L A 0.0104
13 P A -0.5903
14 A A -0.7530
15 D A -1.7947
16 S A -1.8556
17 G A -2.0179
18 S A -1.3900
19 G A -1.6699
20 T A -1.7066
21 K A -2.5802
22 P A -2.1025
23 E A -2.0515
24 Q A -1.9230
25 R A -1.2866
26 I A -0.6344
27 Y A -0.2105
28 Y A 0.0000
29 N A 0.0000
30 S A -1.1382
31 A A -1.3076
32 K A -1.8891
33 K A -1.2431
34 Q A -0.7343
35 C A -0.2918
36 V A 0.1865
37 T A -0.1694
38 F A 0.0000
39 T A -1.1517
40 Y A -1.7568
41 N A -2.1767
42 G A -2.3056
43 K A -2.8464
44 G A -2.0744
45 G A -1.8246
46 N A -1.7256
47 G A -1.3548
48 N A 0.0000
49 N A -0.9196
50 F A -1.3911
51 S A -1.8201
52 R A -3.3371
53 T A -2.6827
54 N A -3.7485
55 D A -3.9338
56 C A 0.0000
57 R A -3.5829
58 Q A -3.3644
59 T A -2.0150
60 C A 0.0000
61 Q A -1.0166
62 Y A 0.7376
63 P A 0.5757
64 V A 1.4664
65 G A 0.5609
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018