| Chain sequence(s) |
A: GVPCGESCVYIPCFTGIINCSCRDKVCYNN
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:15)
[INFO] Main: Simulation completed successfully. (00:00:15)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -0.4200 | |
| 2 | V | A | 1.0572 | |
| 3 | P | A | 0.1341 | |
| 4 | C | A | 0.3494 | |
| 5 | G | A | -0.2657 | |
| 6 | E | A | 0.1368 | |
| 7 | S | A | 0.2313 | |
| 8 | C | A | 0.7120 | |
| 9 | V | A | 1.7087 | |
| 10 | Y | A | 2.1806 | |
| 11 | I | A | 1.7565 | |
| 12 | P | A | 1.1250 | |
| 13 | C | A | 1.5046 | |
| 14 | F | A | 2.4939 | |
| 15 | T | A | 1.8690 | |
| 16 | G | A | 1.5739 | |
| 17 | I | A | 2.9015 | |
| 18 | I | A | 2.3724 | |
| 19 | N | A | -0.0743 | |
| 20 | C | A | 0.0000 | |
| 21 | S | A | -0.7350 | |
| 22 | C | A | -0.9389 | |
| 23 | R | A | -2.6203 | |
| 24 | D | A | -2.8775 | |
| 25 | K | A | -1.8282 | |
| 26 | V | A | -1.1251 | |
| 27 | C | A | 0.0000 | |
| 28 | Y | A | -0.9654 | |
| 29 | N | A | -0.7958 | |
| 30 | N | A | -1.3326 |