| Chain sequence(s) |
A: FYGHKYF
C: FYGHKYF B: FYGHKYF D: FYGHKYF input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:30)
[INFO] Main: Simulation completed successfully. (00:00:31)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 3.0826 | |
| 2 | Y | A | 2.5997 | |
| 3 | G | A | 0.7358 | |
| 4 | H | A | -0.1942 | |
| 5 | K | A | 0.5063 | |
| 6 | Y | A | 2.4840 | |
| 7 | F | A | 3.5027 | |
| 1 | F | B | 2.7233 | |
| 2 | Y | B | 2.7104 | |
| 3 | G | B | 0.0000 | |
| 4 | H | B | -0.1189 | |
| 5 | K | B | 0.6351 | |
| 6 | Y | B | 2.7209 | |
| 7 | F | B | 4.0452 | |
| 1 | F | C | 2.9766 | |
| 2 | Y | C | 2.6242 | |
| 3 | G | C | 0.6341 | |
| 4 | H | C | -0.5163 | |
| 5 | K | C | -0.0012 | |
| 6 | Y | C | 1.8791 | |
| 7 | F | C | 3.4429 | |
| 1 | F | D | 2.9086 | |
| 2 | Y | D | 2.3822 | |
| 3 | G | D | 0.3844 | |
| 4 | H | D | -1.2781 | |
| 5 | K | D | -1.1373 | |
| 6 | Y | D | 1.1969 | |
| 7 | F | D | 2.7554 |