Project name: 3f52927e539f54b

Status: done

Started: 2026-06-01 14:08:41
Settings
Chain sequence(s) A: MKLLILTCLVAVALARPKHPIKHQGLPQEVLNENLLRFFVAPFPEVFGKEKVNELSKDIGSESTEDQAMEDIKQMEAESISSSEEIVPNSVEQKHIQKEDVPSERYLGYLEQLLRLKKYKVPQLEIVPNSAEERLHSMKEGIHAQQKEPMIGVNQELAYFYPELFRQFYQLDAYPSGAWYYVPLGTQYTDAPSFSDIPNPIGSENSEKTTMPLW
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:04:52)
[INFO]       Main:     Simulation completed successfully.                                          (00:04:54)
Show buried residues

Minimal score value
-4.0554
Maximal score value
4.2332
Average score
-0.3671
Total score value
-78.5561

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 1.4863
2 K A 0.4791
3 L A 2.4210
4 L A 3.1198
5 I A 3.0051
6 L A 3.1545
7 T A 2.9479
8 C A 3.6659
9 L A 4.2332
10 V A 4.0217
11 A A 2.8757
12 V A 3.1316
13 A A 2.0270
14 L A 2.0630
15 A A 0.6885
16 R A -1.6219
17 P A -1.7834
18 K A -2.4042
19 H A -1.9238
20 P A -0.7836
21 I A 0.0827
22 K A -1.8084
23 H A -1.7936
24 Q A -1.7234
25 G A -1.0157
26 L A 0.4226
27 P A -0.2917
28 Q A -1.3996
29 E A -1.8783
30 V A 0.3802
31 L A 0.4371
32 N A -1.5827
33 E A -2.0588
34 N A -0.9336
35 L A 1.4229
36 L A 1.4387
37 R A 0.1455
38 F A 2.7366
39 F A 3.8486
40 V A 3.3769
41 A A 2.1130
42 P A 1.1932
43 F A 1.9854
44 P A 0.5392
45 E A -0.2318
46 V A 1.7407
47 F A 1.3893
48 G A -0.9522
49 K A -2.6675
50 E A -3.0540
51 K A -2.8272
52 V A -0.6482
53 N A -1.5741
54 E A -1.7612
55 L A -0.2349
56 S A -1.1510
57 K A -2.1007
58 D A -1.6367
59 I A 0.4594
60 G A -0.6115
61 S A -0.9581
62 E A -2.1443
63 S A -1.5402
64 T A -1.7969
65 E A -3.0469
66 D A -3.3162
67 Q A -2.2121
68 A A -0.7498
69 M A -0.4623
70 E A -1.7638
71 D A -1.8009
72 I A -0.2515
73 K A -1.4622
74 Q A -1.5515
75 M A -0.8012
76 E A -1.9501
77 A A -1.5353
78 E A -1.8537
79 S A -0.1595
80 I A 1.3502
81 S A 0.5733
82 S A -0.3891
83 S A -1.6439
84 E A -2.3991
85 E A -1.3804
86 I A 1.5205
87 V A 1.9260
88 P A 0.5785
89 N A -0.8990
90 S A -0.5891
91 V A -0.1660
92 E A -2.3510
93 Q A -2.3543
94 K A -2.6257
95 H A -1.9958
96 I A -0.4504
97 Q A -2.3143
98 K A -2.9445
99 E A -3.1129
100 D A -2.5283
101 V A -0.2104
102 P A -0.3244
103 S A -1.0245
104 E A -1.6282
105 R A -1.6378
106 Y A 0.7078
107 L A 0.5181
108 G A -0.2157
109 Y A 0.9562
110 L A 1.1719
111 E A -0.5995
112 Q A -0.6391
113 L A -0.0570
114 L A -0.0500
115 R A -1.6357
116 L A -1.0293
117 K A -2.0898
118 K A -2.1116
119 Y A -0.5861
120 K A -1.8251
121 V A -0.9143
122 P A -1.0654
123 Q A -0.8250
124 L A 0.8867
125 E A 0.1070
126 I A 2.0734
127 V A 1.9339
128 P A -0.0296
129 N A -1.8913
130 S A -2.0980
131 A A -2.1624
132 E A -3.4462
133 E A -4.0554
134 R A -3.4539
135 L A -2.1702
136 H A -3.0422
137 S A -2.3049
138 M A -1.3190
139 K A -2.2410
140 E A -2.5417
141 G A -1.4786
142 I A -0.7289
143 H A -2.1521
144 A A -2.2143
145 Q A -2.7692
146 Q A -2.9827
147 K A -3.5729
148 E A -2.8231
149 P A -0.8744
150 M A 0.7525
151 I A 1.9441
152 G A 0.2564
153 V A -0.2030
154 N A -1.5734
155 Q A -2.0658
156 E A -1.2883
157 L A 0.8042
158 A A 0.8585
159 Y A 1.7763
160 F A 2.7492
161 Y A 2.0173
162 P A 0.4485
163 E A -0.7987
164 L A 0.5198
165 F A 0.9901
166 R A -1.1770
167 Q A -0.7460
168 F A 1.5670
169 Y A 1.0830
170 Q A -0.2529
171 L A 0.8288
172 D A -0.4443
173 A A 0.0844
174 Y A 0.5924
175 P A 0.0137
176 S A 0.0792
177 G A 0.3830
178 A A 0.9104
179 W A 2.3005
180 Y A 2.8731
181 Y A 3.2493
182 V A 3.2426
183 P A 1.8036
184 L A 1.7483
185 G A 0.2945
186 T A -0.0927
187 Q A -0.7476
188 Y A 0.1710
189 T A -0.6395
190 D A -1.6757
191 A A -0.5587
192 P A -0.5625
193 S A -0.0228
194 F A 1.5809
195 S A 0.2560
196 D A -0.6729
197 I A 0.9824
198 P A -0.1853
199 N A -0.7508
200 P A 0.1446
201 I A 0.9751
202 G A -0.4937
203 S A -1.1942
204 E A -2.6798
205 N A -3.1184
206 S A -2.7238
207 E A -3.3742
208 K A -2.7336
209 T A -1.1815
210 T A -0.1448
211 M A 1.2044
212 P A 1.2729
213 L A 2.2476
214 W A 1.9793
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018