Project name: RADA16-I_4

Status: done

Started: 2026-06-25 06:25:07
Settings
Chain sequence(s) A: RADARADARADARADA
C: RADARADARADARADA
B: RADARADARADARADA
D: RADARADARADARADA
input PDB
Selected Chain(s) A,C,B,D
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:39)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:41)
Show buried residues

Minimal score value
-4.346
Maximal score value
0.0
Average score
-2.4623
Total score value
-157.5893

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 R A -2.9638
2 A A -2.1838
3 D A -3.1739
4 A A -2.9059
5 R A -3.0872
6 A A -2.8680
7 D A -3.3061
8 A A -2.8862
9 R A -3.3745
10 A A -2.9468
11 D A -3.5498
12 A A -3.1776
13 R A -3.2522
14 A A -2.4328
15 D A -2.9597
16 A A -1.6205
1 R B -4.2666
2 A B -2.6886
3 D B -3.0851
4 A B -3.0567
5 R B -2.7203
6 A B -1.7754
7 D B -2.1770
8 A B -1.9155
9 R B -1.9913
10 A B -1.4991
11 D B -1.9059
12 A B -2.1101
13 R B -2.0263
14 A B -1.3557
15 D B 0.0000
16 A B -1.0874
1 R C -2.8500
2 A C -2.2292
3 D C -2.9806
4 A C -2.6687
5 R C -3.0767
6 A C -2.3167
7 D C -2.2829
8 A C -2.1538
9 R C -2.3799
10 A C -1.7185
11 D C -1.7432
12 A C -1.8949
13 R C -2.3675
14 A C -1.3142
15 D C -1.5656
16 A C -1.1421
1 R D -4.3460
2 A D -3.0507
3 D D -3.3889
4 A D -3.4701
5 R D -3.6743
6 A D -2.3649
7 D D -2.4727
8 A D -2.3967
9 R D -2.3407
10 A D -2.0140
11 D D -2.2883
12 A D -2.1030
13 R D -2.7562
14 A D -1.9977
15 D D -2.4575
16 A D -1.4333
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Laboratory of Theory of Biopolymers 2018