Project name: ECD_353_1st

Status: done

Started: 2024-06-18 22:01:19
Settings
Chain sequence(s) A: NFTLPPNFGKRPTDLRLSVKLVEMLKNIMLLGGCTLEESKIKEVLEKPKVINLALEAQFSYMPKTALELAKVFRLKNIEALAILVCGCSPTGNLSNLYSLKLKGDPNLSYVMTTCSTKCAREHMADLLTKYSRGIYDGDLKDKVPYKGIEISLELVTKPCTEGMEIKSKRPQLLRPLMKELEEEIEKLKKEVTKLSKENVGKSIMFAMTPKILKTSSLMPRLGYEKGLELSTKACLNGRCRRTVSVETGCRNVQLCSTILNVAFPPEVIGPLFFFPLLYMEQQTKEGEELVEKHKEEEKELE
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:06:11)
[INFO]       Main:     Simulation completed successfully.                                          (00:06:13)
Show buried residues

Minimal score value
-5.2223
Maximal score value
1.8166
Average score
-1.1324
Total score value
-341.9909

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 N A -0.9892
2 F A 0.3287
3 T A -0.1874
4 L A -0.2020
5 P A -0.2730
6 P A -1.0643
7 N A -2.0443
8 F A -1.2594
9 G A -1.3651
10 K A -2.2104
11 R A -1.6246
12 P A -0.9634
13 T A -0.8678
14 D A -0.8942
15 L A 0.3813
16 R A -0.5669
17 L A -0.4253
18 S A 0.7692
19 V A 1.5543
20 K A -0.0192
21 L A 0.4605
22 V A 0.8430
23 E A -0.3492
24 M A -0.7348
25 L A 0.0637
26 K A -1.2817
27 N A -1.0732
28 I A 0.0000
29 M A 0.0000
30 L A -0.6109
31 L A 0.0000
32 G A 0.0000
33 G A 0.0000
34 C A 0.0000
35 T A -0.2404
36 L A 0.0000
37 E A -2.7755
38 E A -3.3366
39 S A -2.6673
40 K A -2.8974
41 I A 0.0000
42 K A -3.7458
43 E A -3.7745
44 V A 0.0000
45 L A -1.8671
46 E A -3.3448
47 K A -3.1733
48 P A -2.1576
49 K A -2.5701
50 V A 0.0000
51 I A -1.3286
52 N A -2.0933
53 L A -1.2532
54 A A 0.0000
55 L A -0.9262
56 E A -1.7982
57 A A 0.0000
58 Q A 0.0000
59 F A 0.0000
60 S A -0.7705
61 Y A -0.5412
62 M A 0.0000
63 P A 0.0000
64 K A -1.5022
65 T A 0.0000
66 A A 0.0000
67 L A -1.1839
68 E A -2.3266
69 L A 0.0000
70 A A 0.0000
71 K A -2.2056
72 V A -0.0563
73 F A -1.3053
74 R A -2.6710
75 L A -2.1089
76 K A -2.8062
77 N A -2.1152
78 I A -0.6380
79 E A -1.3240
80 A A 0.0000
81 L A 0.0000
82 A A 0.0000
83 I A 0.0000
84 L A 0.0000
85 V A 0.0000
86 C A 0.0000
87 G A 0.0000
88 C A 0.0000
89 S A 0.0000
90 P A 0.0000
91 T A 0.0000
92 G A 0.0000
93 N A 0.0087
94 L A 0.2749
95 S A 0.0000
96 N A 0.0000
97 L A 0.1733
98 Y A 0.0000
99 S A 0.0000
100 L A -0.7374
101 K A -1.2978
102 L A 0.0000
103 K A -2.2831
104 G A 0.0000
105 D A 0.0000
106 P A -0.5610
107 N A 0.0000
108 L A 0.0000
109 S A 0.0000
110 Y A 0.1520
111 V A 0.0000
112 M A 0.0000
113 T A 0.0000
114 T A 0.0000
115 C A -0.2190
116 S A 0.0000
117 T A 0.0000
118 K A -2.0159
119 C A -1.4451
120 A A 0.0000
121 R A -2.5758
122 E A -2.9589
123 H A -2.6001
124 M A 0.0000
125 A A -2.6076
126 D A -2.7861
127 L A -1.6422
128 L A 0.0000
129 T A -2.4815
130 K A -2.3047
131 Y A -1.4516
132 S A 0.0000
133 R A -2.5821
134 G A -1.7649
135 I A -1.3226
136 Y A -1.5477
137 D A -2.5111
138 G A -2.1296
139 D A -3.0418
140 L A 0.0000
141 K A -3.0655
142 D A -2.7130
143 K A -1.7680
144 V A 0.0000
145 P A -0.8185
146 Y A -0.8239
147 K A -1.5519
148 G A -1.0130
149 I A 0.0000
150 E A -1.7573
151 I A -0.3291
152 S A -0.5539
153 L A -1.4552
154 E A -2.1179
155 L A -1.0426
156 V A 0.0000
157 T A -1.5081
158 K A -2.7055
159 P A 0.0000
160 C A 0.0000
161 T A -2.0353
162 E A -2.6664
163 G A 0.0000
164 M A -2.4334
165 E A -3.3196
166 I A -2.4432
167 K A -2.7223
168 S A -3.0061
169 K A -3.3528
170 R A -3.2187
171 P A -2.4255
172 Q A -1.9689
173 L A -0.6728
174 L A -1.2095
175 R A -2.3795
176 P A -1.6777
177 L A -1.6578
178 M A -2.2919
179 K A -4.0826
180 E A -4.2005
181 L A 0.0000
182 E A -4.7196
183 E A -5.1680
184 E A -4.4791
185 I A 0.0000
186 E A -4.6869
187 K A -4.5263
188 L A 0.0000
189 K A -3.4123
190 K A -3.9861
191 E A -3.6391
192 V A -2.5157
193 T A -2.5398
194 K A -3.6299
195 L A 0.0000
196 S A -2.3109
197 K A -3.7191
198 E A -3.3816
199 N A 0.0000
200 V A 0.0000
201 G A -2.5833
202 K A -1.8338
203 S A -0.3812
204 I A 0.0000
205 M A 0.8420
206 F A 1.8166
207 A A 1.0663
208 M A 0.0000
209 T A -0.1768
210 P A -0.7283
211 K A -1.5493
212 I A 0.0000
213 L A -0.6506
214 K A -1.7680
215 T A 0.0000
216 S A 0.0000
217 S A -1.2388
218 L A -0.5410
219 M A 0.0000
220 P A 0.0000
221 R A -1.9165
222 L A -0.7398
223 G A 0.0000
224 Y A 0.0000
225 E A -2.1124
226 K A -1.2069
227 G A 0.0000
228 L A -0.8470
229 E A -1.3644
230 L A -0.9685
231 S A 0.0000
232 T A -0.9791
233 K A -1.5073
234 A A -0.8194
235 C A -0.1838
236 L A -0.8280
237 N A -1.8874
238 G A -2.0614
239 R A -2.9595
240 C A -1.6688
241 R A -1.5999
242 R A -1.5231
243 T A 0.0000
244 V A 0.0000
245 S A 0.0000
246 V A 0.0000
247 E A 0.0000
248 T A 0.0000
249 G A 0.0000
250 C A 0.0000
251 R A 0.0000
252 N A 0.0000
253 V A 0.0000
254 Q A -0.5977
255 L A 0.0000
256 C A 0.0000
257 S A -0.4086
258 T A -0.4926
259 I A 0.0000
260 L A 0.0000
261 N A -0.9643
262 V A -0.1640
263 A A 0.0000
264 F A 0.0000
265 P A -0.4695
266 P A -0.8141
267 E A -1.2783
268 V A 0.5480
269 I A 0.0000
270 G A -0.1103
271 P A 0.4310
272 L A 0.0000
273 F A 0.1062
274 F A 0.0000
275 F A 0.0000
276 P A 0.0000
277 L A -0.0383
278 L A 0.0000
279 Y A 0.0000
280 M A -0.6418
281 E A -1.7588
282 Q A -1.9163
283 Q A 0.0000
284 T A -1.7552
285 K A -3.0802
286 E A -2.5099
287 G A 0.0000
288 E A -2.7820
289 E A -3.5525
290 L A -2.6852
291 V A 0.0000
292 E A -4.4799
293 K A -4.5277
294 H A 0.0000
295 K A -4.5435
296 E A -5.2223
297 E A -4.9531
298 E A -4.0409
299 K A -4.3743
300 E A -3.8080
301 L A -1.5904
302 E A -2.5456
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Laboratory of Theory of Biopolymers 2018