Project name: query_structure

Status: done

Started: 2026-03-17 01:13:56
Settings
Chain sequence(s) A: VSDVPRDLEVVAATPTSLLISWDAPCQHNLYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTKRPLPSKPISINYRT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:38)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:39)
Show buried residues

Minimal score value
-3.2949
Maximal score value
1.6929
Average score
-0.7051
Total score value
-64.164

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 1.6929
2 S A 0.2409
3 D A -0.4132
4 V A -0.8047
5 P A 0.0000
6 R A -2.8788
7 D A -3.2949
8 L A 0.0000
9 E A -2.1085
10 V A 0.0793
11 V A 1.5262
12 A A 0.8889
13 A A 0.3000
14 T A -0.5386
15 P A -1.1530
16 T A -1.0024
17 S A -0.5378
18 L A 0.0000
19 L A 0.7316
20 I A 0.0000
21 S A -1.1167
22 W A 0.0000
23 D A -3.1089
24 A A -1.8338
25 P A -0.5818
26 C A -0.3579
27 Q A -1.2872
28 H A -1.5699
29 N A 0.0000
30 L A 0.4252
31 Y A 0.4224
32 Y A 0.0000
33 R A -0.8759
34 I A 0.0000
35 T A -0.5467
36 Y A -0.1838
37 G A 0.0000
38 E A -1.4833
39 T A -1.2181
40 G A -1.2234
41 G A -1.3412
42 N A -1.5218
43 S A -0.8042
44 P A -0.2605
45 V A 0.5443
46 Q A -0.6560
47 E A -1.5531
48 F A -0.7731
49 T A -0.4133
50 V A 0.0000
51 P A -0.3739
52 G A -0.4943
53 S A -1.0747
54 K A -1.8738
55 S A -1.3381
56 T A -0.7477
57 A A 0.0000
58 T A 0.2326
59 I A 0.0000
60 S A -0.6594
61 G A -1.0302
62 L A 0.0000
63 K A -2.3665
64 P A -1.6651
65 G A -1.4374
66 V A -1.4270
67 D A -2.0620
68 Y A 0.0000
69 T A -0.6862
70 I A 0.0000
71 T A -0.2088
72 V A 0.0000
73 Y A -0.1361
74 A A 0.0000
75 V A 0.0905
76 T A -0.9184
77 K A -2.1781
78 R A -2.2957
79 P A -0.8011
80 L A 0.2700
81 P A -0.2028
82 S A -0.6749
83 K A -1.5136
84 P A -0.8900
85 I A -0.5603
86 S A -0.6741
87 I A -0.7258
88 N A -1.7034
89 Y A -1.4225
90 R A -2.5136
91 T A -1.5108
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018