Project name: 1JSF [mutate: IT56A] [mutate: FI57A] [mutate: FI57A]

Status: done

Started: 2024-11-21 06:01:12
Settings
Chain sequence(s) A: KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues FI57A
Energy difference between WT (input) and mutated protein (by FoldX) 3.65497 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:01:16)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:01:17)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:48)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:49)
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:01:16)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:01:17)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:47)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:48)
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:01:18)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:01:19)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:50)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:51)
Show buried residues

Minimal score value
-4.2695
Maximal score value
1.7201
Average score
-1.0126
Total score value
-131.6373

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -1.8701
2 V A -0.0707
3 F A 0.0000
4 E A -2.1421
5 R A -2.1295
6 C A -1.7866
7 E A -2.0638
8 L A 0.0000
9 A A 0.0000
10 R A -2.8335
11 T A 0.0000
12 L A 0.0000
13 K A -2.6925
14 R A -2.7521
15 L A -1.3870
16 G A -1.4375
17 M A 0.0000
18 D A -2.2848
19 G A -1.7892
20 Y A -1.7438
21 R A -2.7682
22 G A -1.6693
23 I A 0.0000
24 S A -1.3071
25 L A 0.0000
26 A A 0.0000
27 N A -1.2272
28 W A 0.0000
29 M A 0.0000
30 C A 0.0000
31 L A 0.0000
32 A A 0.0000
33 K A -1.2352
34 W A -0.6139
35 E A -0.6058
36 S A -0.7816
37 G A -0.7704
38 Y A 0.0000
39 N A -1.2528
40 T A 0.0000
41 R A -2.3132
42 A A -1.2371
43 T A -0.7679
44 N A -0.4050
45 Y A 0.0428
46 N A -1.1221
47 A A -1.1777
48 G A -1.6561
49 D A -2.6664
50 R A -2.9407
51 S A 0.0000
52 T A 0.0000
53 D A -0.4429
54 Y A 0.0000
55 G A 0.0000
56 I A 0.0000
57 I A 0.0000 mutated: FI57A
58 Q A -0.6708
59 I A 0.0000
60 N A -0.1641
61 S A 0.0000
62 R A -0.2923
63 Y A 1.6230
64 W A 0.4972
65 C A 0.0000
66 N A -1.0447
67 D A -1.5632
68 G A -1.7579
69 K A -2.5308
70 T A 0.0000
71 P A -1.4193
72 G A -0.5666
73 A A 0.3010
74 V A 1.7201
75 N A 0.3603
76 A A 0.2944
77 C A -0.3831
78 H A -0.7807
79 L A -0.6363
80 S A -0.7697
81 C A 0.0000
82 S A -0.6253
83 A A -0.7962
84 L A 0.0000
85 L A -1.6688
86 Q A -2.4834
87 D A -3.1292
88 N A -2.5893
89 I A 0.0000
90 A A -0.8475
91 D A -0.8958
92 A A 0.0000
93 V A 0.0000
94 A A -0.4959
95 C A 0.0000
96 A A 0.0000
97 K A -1.7558
98 R A -2.0864
99 V A 0.0000
100 V A 0.0000
101 R A -3.2821
102 D A -2.7131
103 P A -1.5473
104 Q A -1.5166
105 G A -2.0568
106 I A 0.0000
107 R A -1.7301
108 A A -0.6478
109 W A 0.0000
110 V A 0.3364
111 A A -0.7414
112 W A -1.6145
113 R A -2.8907
114 N A -2.7625
115 R A -2.7404
116 C A 0.0000
117 Q A -3.2394
118 N A -3.3837
119 R A -4.2695
120 D A -3.7430
121 V A -3.0886
122 R A -3.4302
123 Q A -2.8317
124 Y A 0.0000
125 V A 0.0000
126 Q A -2.2603
127 G A -1.2421
128 C A 0.0000
129 G A -0.7150
130 V A -0.4688
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Laboratory of Theory of Biopolymers 2018