Project name: try [mutate: SA16A, RA17A, QE20A, DE21A, QK24A, ME27A, NS28A]

Status: done

Started: 2026-06-23 18:18:41
Settings
Chain sequence(s) A: HSQGTFTSDYSKYLDSRRAQDFVQWLMNT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues QE20A,DE21A,RA17A,SA16A,QK24A,ME27A,NS28A
Energy difference between WT (input) and mutated protein (by FoldX) 0.855359 kcal/mol
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       FoldX:    Building mutant model                                                       (00:00:12)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:02:39)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:50)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:51)
Show buried residues

Minimal score value
-3.0039
Maximal score value
1.0575
Average score
-0.8716
Total score value
-25.2761

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 H A -1.3473
2 S A -1.3319
3 Q A -1.3803
4 G A -0.4572
5 T A -0.0328
6 F A 1.0575
7 T A 0.1870
8 S A -0.6416
9 D A -1.2394
10 Y A 0.1557
11 S A -0.8192
12 K A -1.9917
13 Y A -0.4077
14 L A -1.0074
15 D A -2.9497
16 A A -1.6999 mutated: SA16A
17 A A -1.9859 mutated: RA17A
18 R A -3.0039
19 A A -1.6400
20 E A -2.5117 mutated: QE20A
21 E A -2.3442 mutated: DE21A
22 F A 0.6847
23 V A 0.5758
24 K A -1.2928 mutated: QK24A
25 W A 0.7234
26 L A 0.8801
27 E A -1.0619 mutated: ME27A
28 S A -0.3394 mutated: NS28A
29 T A -0.0544
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018