| Chain sequence(s) |
A: HSQGTFTSDYSKYLDSRRAQDFVQWLMNT
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | QE20A,DE21A,RA17A,SA16A,QK24A,ME27A,NS28A |
| Energy difference between WT (input) and mutated protein (by FoldX) | 0.855359 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] FoldX: Building mutant model (00:00:12)
[INFO] FoldX: Starting FoldX energy minimalization (00:02:39)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:50)
[INFO] Main: Simulation completed successfully. (00:02:51)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | H | A | -1.3473 | |
| 2 | S | A | -1.3319 | |
| 3 | Q | A | -1.3803 | |
| 4 | G | A | -0.4572 | |
| 5 | T | A | -0.0328 | |
| 6 | F | A | 1.0575 | |
| 7 | T | A | 0.1870 | |
| 8 | S | A | -0.6416 | |
| 9 | D | A | -1.2394 | |
| 10 | Y | A | 0.1557 | |
| 11 | S | A | -0.8192 | |
| 12 | K | A | -1.9917 | |
| 13 | Y | A | -0.4077 | |
| 14 | L | A | -1.0074 | |
| 15 | D | A | -2.9497 | |
| 16 | A | A | -1.6999 | mutated: SA16A |
| 17 | A | A | -1.9859 | mutated: RA17A |
| 18 | R | A | -3.0039 | |
| 19 | A | A | -1.6400 | |
| 20 | E | A | -2.5117 | mutated: QE20A |
| 21 | E | A | -2.3442 | mutated: DE21A |
| 22 | F | A | 0.6847 | |
| 23 | V | A | 0.5758 | |
| 24 | K | A | -1.2928 | mutated: QK24A |
| 25 | W | A | 0.7234 | |
| 26 | L | A | 0.8801 | |
| 27 | E | A | -1.0619 | mutated: ME27A |
| 28 | S | A | -0.3394 | mutated: NS28A |
| 29 | T | A | -0.0544 |