Project name: KLD-12_4

Status: done

Started: 2026-06-25 01:52:11
Settings
Chain sequence(s) A: KLDLKLDLKLDL
C: KLDLKLDLKLDL
B: KLDLKLDLKLDL
D: KLDLKLDLKLDL
input PDB
Selected Chain(s) A,C,B,D
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:31)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:32)
Show buried residues

Minimal score value
-2.8091
Maximal score value
0.6218
Average score
-1.3789
Total score value
-66.1886

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -1.2957
2 L A -0.2266
3 D A -1.0343
4 L A -0.7370
5 K A -1.4099
6 L A -0.4682
7 D A -1.8367
8 L A -1.1208
9 K A -2.2839
10 L A -1.0180
11 D A -1.3889
12 L A 0.3160
1 K B -1.6589
2 L B -1.0918
3 D B -2.1917
4 L B -1.5315
5 K B -2.2942
6 L B -1.0269
7 D B -1.4728
8 L B -0.6940
9 K B -1.4824
10 L B -0.6984
11 D B -1.2586
12 L B 0.4056
1 K C -1.5966
2 L C -0.7887
3 D C -1.9441
4 L C -1.5075
5 K C -2.6399
6 L C -1.6618
7 D C -2.7739
8 L C -1.5911
9 K C -2.4423
10 L C -1.2493
11 D C -1.7235
12 L C 0.1603
1 K D -1.7552
2 L D -1.2251
3 D D -2.5327
4 L D -1.9105
5 K D -2.6860
6 L D -1.6363
7 D D -2.8091
8 L D -1.4869
9 K D -2.0398
10 L D -0.6840
11 D D -0.7868
12 L D 0.6218
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Laboratory of Theory of Biopolymers 2018