| Chain sequence(s) |
A: KLDLKLDLKLDL
C: KLDLKLDLKLDL B: KLDLKLDLKLDL D: KLDLKLDLKLDL input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:31)
[INFO] Main: Simulation completed successfully. (00:01:32)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | K | A | -1.2957 | |
| 2 | L | A | -0.2266 | |
| 3 | D | A | -1.0343 | |
| 4 | L | A | -0.7370 | |
| 5 | K | A | -1.4099 | |
| 6 | L | A | -0.4682 | |
| 7 | D | A | -1.8367 | |
| 8 | L | A | -1.1208 | |
| 9 | K | A | -2.2839 | |
| 10 | L | A | -1.0180 | |
| 11 | D | A | -1.3889 | |
| 12 | L | A | 0.3160 | |
| 1 | K | B | -1.6589 | |
| 2 | L | B | -1.0918 | |
| 3 | D | B | -2.1917 | |
| 4 | L | B | -1.5315 | |
| 5 | K | B | -2.2942 | |
| 6 | L | B | -1.0269 | |
| 7 | D | B | -1.4728 | |
| 8 | L | B | -0.6940 | |
| 9 | K | B | -1.4824 | |
| 10 | L | B | -0.6984 | |
| 11 | D | B | -1.2586 | |
| 12 | L | B | 0.4056 | |
| 1 | K | C | -1.5966 | |
| 2 | L | C | -0.7887 | |
| 3 | D | C | -1.9441 | |
| 4 | L | C | -1.5075 | |
| 5 | K | C | -2.6399 | |
| 6 | L | C | -1.6618 | |
| 7 | D | C | -2.7739 | |
| 8 | L | C | -1.5911 | |
| 9 | K | C | -2.4423 | |
| 10 | L | C | -1.2493 | |
| 11 | D | C | -1.7235 | |
| 12 | L | C | 0.1603 | |
| 1 | K | D | -1.7552 | |
| 2 | L | D | -1.2251 | |
| 3 | D | D | -2.5327 | |
| 4 | L | D | -1.9105 | |
| 5 | K | D | -2.6860 | |
| 6 | L | D | -1.6363 | |
| 7 | D | D | -2.8091 | |
| 8 | L | D | -1.4869 | |
| 9 | K | D | -2.0398 | |
| 10 | L | D | -0.6840 | |
| 11 | D | D | -0.7868 | |
| 12 | L | D | 0.6218 |