Project name: query_structure

Status: done

Started: 2026-03-16 20:29:22
Settings
Chain sequence(s) A: LPAPKNLVVSEVTEDSLRLSWTWPYADLDSFLIQYQESEKVGEAINLTVPGSERSYDLTGLKPGTEYTVSIYGVHNVYKDTNMRGLPLSAEFTT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:52)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:52)
Show buried residues

Minimal score value
-3.0598
Maximal score value
1.2505
Average score
-0.9729
Total score value
-91.4559

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 L A 0.8423
2 P A 0.3365
3 A A -0.0342
4 P A 0.0000
5 K A -2.0685
6 N A -1.3879
7 L A -0.1553
8 V A 0.9340
9 V A 0.1118
10 S A -0.6198
11 E A -1.7824
12 V A -0.9060
13 T A -1.7802
14 E A -2.9099
15 D A -2.9429
16 S A -2.1714
17 L A 0.0000
18 R A -1.4484
19 L A 0.0000
20 S A -0.5048
21 W A 0.0000
22 T A -1.0279
23 W A 0.0000
24 P A -0.2517
25 Y A 0.5128
26 A A -0.5474
27 D A -1.8825
28 L A 0.0000
29 D A -2.3676
30 S A -1.7925
31 F A 0.0000
32 L A -0.4582
33 I A 0.0000
34 Q A -0.5807
35 Y A -0.6243
36 Q A -1.4489
37 E A -2.0901
38 S A -2.0161
39 E A -2.4809
40 K A -1.8040
41 V A 0.0405
42 G A -0.9029
43 E A -2.0450
44 A A -0.9241
45 I A -0.4028
46 N A -1.0095
47 L A -0.1320
48 T A -0.2523
49 V A 0.0000
50 P A -1.0729
51 G A -1.4521
52 S A -1.4254
53 E A -1.4642
54 R A -1.1638
55 S A -0.8257
56 Y A -0.9017
57 D A -1.7576
58 L A 0.0000
59 T A -1.4565
60 G A -1.5608
61 L A 0.0000
62 K A -3.0598
63 P A -2.6028
64 G A -1.8767
65 T A -2.2070
66 E A -2.6737
67 Y A 0.0000
68 T A -1.4413
69 V A 0.0000
70 S A 0.0000
71 I A 0.0000
72 Y A 0.0000
73 G A 0.0000
74 V A 0.0000
75 H A -1.9146
76 N A -2.5088
77 V A -0.9633
78 Y A -0.3056
79 K A -2.2674
80 D A -2.7726
81 T A -2.0760
82 N A -2.6455
83 M A -1.4793
84 R A -1.6384
85 G A 0.0846
86 L A 1.2505
87 P A 0.3196
88 L A -0.0163
89 S A -0.3210
90 A A -0.5823
91 E A -2.1422
92 F A 0.0000
93 T A -1.6313
94 T A -1.9288
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Laboratory of Theory of Biopolymers 2018