Project name: query_structure

Status: done

Started: 2026-03-16 23:55:36
Settings
Chain sequence(s) I: LTYTDCTESGQNLCLCEGSNVVCGQGNKCILGSSDGEKNQCVTGEGTPKPQSGDFEEIPEEEYLQ
H: IVEGSDAEIIGMSSPWQVMLLFRKSPQELLCGASSLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLLEKIYIHPRYNWREENLDRDIALMKLKKPVAFSDYIHPVCLPDRRETAASLLQAGYKGRVVTGWGNLKETGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKKVIDQFG
L: ADCGLRPLFEKKSLEDKTERELLESYI
input PDB
Selected Chain(s) I,H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:05:32)
[INFO]       Main:     Simulation completed successfully.                                          (00:05:34)
Show buried residues

Minimal score value
-3.6567
Maximal score value
1.5914
Average score
-0.864
Total score value
-292.8943

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1B A L -0.5598
1A D L -1.4572
1 C L -0.4366
2 G L 0.0000
3 L L -1.0734
4 R L 0.0000
5 P L 0.0000
6 L L -0.6231
7 F L 0.0000
8 E L -1.6275
9 K L -2.5211
10 K L -2.2809
11 S L -1.2982
12 L L -0.7291
13 E L -2.1419
14 D L 0.0000
14A K L -2.3677
14B T L -1.7159
14C E L 0.0000
14D R L -2.5910
14E E L -2.1009
14F L L 0.0000
14G L L -0.8487
14H E L -1.6682
14I S L -0.5487
14J Y L 0.3962
14K I L 1.5914
16 I H 0.0000
17 V H 0.0000
18 E H -2.6810
19 G H -1.6320
20 S H -1.5223
21 D H -1.7990
22 A H 0.0000
23 E H -0.2997
24 I H 1.0409
25 G H 0.4568
26 M H 0.0000
27 S H 0.0000
28 P H 0.0000
29 W H 0.0000
30 Q H 0.0000
31 V H 0.0000
32 M H 0.0000
33 L H 0.0000
34 F H 0.0000
35 R H -1.0218
36 K H -0.8273
36A S H -0.7562
37 P H -0.9017
38 Q H -1.3991
39 E H -1.3212
40 L H -0.3709
41 L H -0.0275
42 C H 0.0000
43 G H 0.0000
44 A H 0.0000
45 S H 0.0000
46 L H 0.0000
47 I H -0.0129
48 S H -0.4705
49 D H -1.3360
50 R H -1.6840
51 W H 0.0000
52 V H 0.0000
53 L H 0.0000
54 T H 0.0000
55 A H 0.0000
56 A H 0.0000
57 H H 0.0000
58 C H 0.0000
59 L H 0.0000
60 L H -0.4587
60A Y H 0.0000
60B P H -1.2681
60C P H -1.1043
60D W H -1.2854
60E D H -2.0966
60F K H -1.5321
60G N H -1.6724
60H F H -1.0646
60I T H -1.2196
61 E H -1.6671
62 N H -1.9173
63 D H -1.6542
64 L H 0.0000
65 L H 0.0000
66 V H 0.0000
67 R H 0.0000
68 I H 0.0000
69 G H 0.0000
70 K H 0.0000
71 H H -0.1618
72 S H -0.4415
73 R H 0.0000
74 T H -1.7719
75 R H -2.6936
76 Y H -2.0245
77 E H -1.7762
77I R H -2.5597
78 N H -1.8469
79 I H -0.5634
80 E H 0.0000
81 K H -0.9628
82 I H 0.0000
83 S H 0.0000
84 M H -0.8191
85 L H 0.0000
86 E H -2.5837
87 K H -1.7381
88 I H -0.5218
89 Y H 0.3499
90 I H 0.2099
91 H H -0.6706
92 P H -1.1417
93 R H -2.0854
94 Y H 0.0000
95 N H -1.9125
96 W H -1.6528
97 R H -3.0086
97A E H -3.2404
98 N H -1.9310
99 L H 0.0000
100 D H 0.0000
101 R H -1.3516
102 D H 0.0000
103 I H 0.0000
104 A H 0.0000
105 L H 0.0000
106 M H 0.0000
107 K H -1.3984
108 L H 0.0000
109 K H -2.5035
110 K H -2.6510
111 P H -1.6625
112 V H 0.0000
113 A H -0.0682
114 F H 0.4604
115 S H -0.0716
116 D H -0.8525
117 Y H 0.2618
118 I H 0.0000
119 H H 0.0000
120 P H 0.0000
121 V H 0.0000
122 C H 0.0000
123 L H 0.0205
124 P H 0.0000
125 D H -2.9388
126 R H -3.5554
127 E H -3.1506
128 T H -1.5396
129 A H -1.5817
129A A H -1.2200
129B S H -0.5786
129C L H 0.0000
130 L H -0.0234
131 Q H -0.7751
132 A H -0.7325
133 G H -0.3169
134 Y H -0.1817
135 K H -0.5432
136 G H 0.0000
137 R H 0.0000
138 V H 0.0000
139 T H 0.0000
140 G H 0.0000
141 W H 0.0000
142 G H 0.0000
143 N H -1.3502
144 L H -1.5018
145 K H -2.4126
146 E H -1.5757
147 T H -1.0009
150 G H -1.3083
151 Q H -1.3867
152 P H 0.0000
153 S H -0.8160
154 V H -0.5773
155 L H 0.0000
156 Q H 0.0000
157 V H 0.0000
158 V H 0.0000
159 N H 0.0000
160 L H 0.0000
161 P H 0.0000
162 I H 0.0000
163 V H 0.0000
164 E H -1.2304
165 R H -1.7445
166 P H -1.4068
167 V H -1.0993
168 C H 0.0000
169 K H -2.8173
170 D H -2.5925
171 S H -1.7677
172 T H -1.7354
173 R H -2.0014
174 I H -1.9674
175 R H -2.5537
176 I H 0.0000
177 T H -1.6101
178 D H -2.2250
179 N H 0.0000
180 M H 0.0000
181 F H 0.0000
182 C H 0.0000
183 A H 0.0000
184 G H 0.0000
184A Y H -1.9498
185 K H -2.3816
186 P H -2.8717
186A D H -3.1924
186B E H -2.8125
186C G H -2.5509
186D K H -3.3426
187 R H -3.3910
188 G H 0.0000
189 D H -1.1615
190 A H -0.7191
191 C H 0.0000
192 E H -1.0982
193 G H -0.3641
194 D H 0.0000
195 S H 0.0000
196 G H 0.0000
197 G H 0.0000
198 P H 0.0000
199 F H 0.0000
200 V H 0.0000
201 M H 0.0000
202 K H 0.0000
203 S H 0.0000
204 P H 0.0493
204A F H 1.0926
204B N H -0.5289
205 N H -1.0336
206 R H -0.8847
207 W H 0.0000
208 Y H 0.0000
209 Q H 0.0000
210 M H 0.0000
211 G H 0.0000
212 I H 0.0000
213 V H 0.0000
214 S H 0.0000
215 W H 0.0000
216 G H -0.2508
217 E H 0.0000
219 G H 0.0000
220 C H 0.0000
221 D H -1.8806
221A R H -1.8505
222 D H -2.8001
223 G H -1.8499
224 K H -1.3881
225 Y H 0.0000
226 G H 0.0000
227 F H 0.0000
228 Y H 0.0000
229 T H 0.0000
230 H H -0.9028
231 V H 0.0000
232 F H -1.3501
233 R H -2.6748
234 L H 0.0000
235 K H -2.3996
236 K H -2.8315
237 W H 0.0000
238 I H 0.0000
239 Q H -2.7425
240 K H -3.2110
241 V H 0.0000
242 I H -1.3033
243 D H -2.7068
244 Q H -2.0416
245 F H -0.4087
246 G H -0.9359
1 L I 0.0000
2 T I -0.5348
3 Y I 0.0000
4 T I -1.1055
5 D I -1.9488
6 C I 0.0000
7 T I -1.2895
8 E I -1.9444
9 S I -0.8363
10 G I -0.9319
11 Q I 0.0000
12 N I 0.0000
13 L I 0.0000
14 C I 0.0000
15 L I 0.0000
16 C I 0.0000
17 E I -1.3939
18 G I -1.3752
19 S I -1.2215
20 N I -1.0479
21 V I 0.0000
22 C I 0.0000
23 G I -1.4055
24 Q I -2.3995
25 G I -1.8570
26 N I -1.4783
27 K I -1.3805
28 C I 0.0000
29 I I 0.1278
30 L I -0.9287
31 G I -2.1256
32 S I -2.0094
33 D I -2.9584
34 G I -2.7098
35 E I -3.6567
36 K I -3.2919
37 N I -1.6786
38 Q I -1.1907
39 C I -0.2107
40 V I -0.0995
41 T I -0.8501
42 G I -1.5183
43 E I -2.4144
44 G I -1.5829
45 T I -0.9943
46 P I -0.8445
47 K I -1.2181
48 P I -1.0078
49 Q I -1.5153
50 S I -0.9764
54 G I -1.7439
55 D I -2.6195
56 F I -2.1125
57 E I -2.5180
58 E I -2.8867
59 I I 0.0000
60 P I -1.8549
61 E I -2.4554
62 E I -2.1959
63 Y I -0.6037
64 L I -0.1383
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018