Project name: query_structure

Status: done

Started: 2026-03-16 23:22:03
Settings
Chain sequence(s) A: SGSDGGVCPKILKKCRRDSDCPGACICRGNGYCG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:11)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:12)
Show buried residues

Minimal score value
-3.5607
Maximal score value
0.7899
Average score
-1.1995
Total score value
-40.7847

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 S A -0.6947
2 G A -1.0357
3 S A -0.7805
4 D A -1.8986
5 G A -1.1791
6 G A -0.3823
7 V A 0.7899
8 C A 0.0000
9 P A -0.3676
10 K A -0.9493
11 I A 0.0051
12 L A 0.4740
13 K A -1.4968
14 K A -2.6880
15 C A 0.0000
16 R A -3.5607
17 R A -3.3746
18 D A -2.3857
19 S A -1.5750
20 D A -2.0061
21 C A -1.5369
22 P A -0.7720
23 G A -0.5136
24 A A -0.6497
25 C A 0.0000
26 I A -1.1847
27 C A 0.0000
28 R A -2.9802
29 G A -2.0144
30 N A -2.3942
31 G A -2.4942
32 Y A -2.0869
33 C A 0.0000
34 G A -1.0522
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Laboratory of Theory of Biopolymers 2018