Project name: ag-h1-1(1)

Status: done

Started: 2025-03-10 08:51:21
Settings
Chain sequence(s) A: QLQLVESGGKLVQAGGSLRLSCAASGRSVNNYFMGWFRQAPGKEREFVARITWNGAGTYYADSVKGRFTISVDNAKNTVNLQMNSLKPEDTALYYCAARRTDSRRPLFEYDYRGQGTQVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:20)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:21)
Show buried residues

Minimal score value
-3.6218
Maximal score value
0.9573
Average score
-0.9994
Total score value
-122.9253

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -2.0167
2 L A 0.0000
3 Q A -1.8683
4 L A 0.0000
5 V A 0.6026
6 E A 0.0000
7 S A -0.7374
8 G A -1.6221
9 G A -1.6035
10 K A -1.6375
11 L A 0.2212
12 V A 0.0000
13 Q A -1.3156
14 A A -1.4270
15 G A -1.2986
16 G A -1.1044
17 S A -1.4524
18 L A 0.0000
19 R A -2.6836
20 L A 0.0000
21 S A -0.5960
22 C A 0.0000
23 A A -0.1644
24 A A 0.0000
25 S A -1.3296
26 G A -2.0751
27 R A -2.9606
28 S A -2.0088
29 V A 0.0000
30 N A -2.0885
31 N A -2.5124
32 Y A 0.0000
33 F A -0.4220
34 M A 0.0000
35 G A 0.0000
36 W A 0.0000
37 F A 0.0000
38 R A 0.0000
39 Q A -2.2275
40 A A -2.0361
41 P A -1.4525
42 G A -1.9804
43 K A -3.3793
44 E A -3.6218
45 R A -2.9432
46 E A -1.9724
47 F A 0.0000
48 V A 0.0000
49 A A 0.0000
50 R A 0.3288
51 I A 0.0000
52 T A -0.3899
53 W A -0.9345
54 N A -1.5770
55 G A -0.8968
56 A A -0.4703
57 G A -0.1802
58 T A 0.3607
59 Y A 0.5475
60 Y A -0.4503
61 A A -1.2194
62 D A -2.3915
63 S A -1.7589
64 V A 0.0000
65 K A -2.5011
66 G A -1.7779
67 R A -1.6376
68 F A 0.0000
69 T A -0.9915
70 I A 0.0000
71 S A -0.5536
72 V A -0.7799
73 D A -1.3770
74 N A -1.7401
75 A A -1.2511
76 K A -2.0896
77 N A -1.7772
78 T A -0.8351
79 V A 0.0000
80 N A -0.9642
81 L A 0.0000
82 Q A -1.8796
83 M A 0.0000
84 N A -1.5535
85 S A -1.1617
86 L A 0.0000
87 K A -2.1097
88 P A -1.7826
89 E A -2.2353
90 D A 0.0000
91 T A -1.0831
92 A A 0.0000
93 L A -0.7242
94 Y A 0.0000
95 Y A 0.0000
96 C A 0.0000
97 A A 0.0000
98 A A 0.0000
99 R A -1.7522
100 R A -2.6741
101 T A -1.8933
102 D A -2.5793
103 S A -2.5799
104 R A -3.0400
105 R A -2.6671
106 P A -0.6797
107 L A 0.9573
108 F A 0.8276
109 E A -0.8986
110 Y A -1.0209
111 D A -1.7925
112 Y A -1.4565
113 R A -1.8491
114 G A -1.1168
115 Q A -1.3677
116 G A -0.9291
117 T A -1.0301
118 Q A -1.4819
119 V A 0.0000
120 T A -0.7207
121 V A 0.0000
122 S A -0.7948
123 S A -0.8346
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Laboratory of Theory of Biopolymers 2018