Project name: 4271fa016bca849

Status: done

Started: 2025-07-14 09:00:13
Settings
Chain sequence(s) H: QVQLVQSGAEVKKPGASVKVSCKSSGYIFSDYYIHWVRQAPGQGLEWMGRINPHSGGTNYAQNFQGRVTMTRDTSIATTYMEVSRLISDDTAMYYCARDLGTVFGVLSDAFDIWGQGTMVTVSS
L: DIVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSTPPLTFGGGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:32)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:34)
Show buried residues

Minimal score value
-2.5476
Maximal score value
2.8932
Average score
-0.4878
Total score value
-116.0845

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.4162
2 V H -0.5621
3 Q H -1.2834
4 L H 0.0000
5 V H 0.2517
6 Q H 0.0000
7 S H -0.5744
8 G H -0.5781
9 A H -0.0289
11 E H -0.2092
12 V H 0.8862
13 K H -0.5517
14 K H -1.8039
15 P H -1.2635
16 G H -1.4743
17 A H -1.2643
18 S H -1.3875
19 V H 0.0000
20 K H -1.9106
21 V H 0.0000
22 S H -0.5456
23 C H 0.0000
24 K H -0.7100
25 S H 0.0000
26 S H -0.2547
27 G H -0.5101
28 Y H 0.4165
29 I H 1.5535
30 F H 0.0000
35 S H -0.6219
36 D H -1.2332
37 Y H -0.2243
38 Y H -0.1429
39 I H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H -0.4670
44 Q H -0.7302
45 A H -1.0018
46 P H -0.9889
47 G H -1.2180
48 Q H -1.7725
49 G H -1.1004
50 L H 0.0000
51 E H -0.8602
52 W H 0.0000
53 M H 0.0000
54 G H 0.0000
55 R H 0.0000
56 I H 0.0000
57 N H -0.9038
58 P H 0.0000
59 H H -1.6986
62 S H -0.9948
63 G H -0.9556
64 G H -0.8356
65 T H -0.4435
66 N H -0.7820
67 Y H -0.9343
68 A H 0.0000
69 Q H -2.2705
70 N H -2.2736
71 F H 0.0000
72 Q H -2.2400
74 G H -1.6733
75 R H -1.5466
76 V H 0.0000
77 T H -0.6958
78 M H 0.0000
79 T H -0.4619
80 R H -0.9223
81 D H -0.8374
82 T H -0.5238
83 S H 0.1474
84 I H 0.7804
85 A H 0.2085
86 T H 0.0000
87 T H 0.0000
88 Y H -0.5807
89 M H 0.0000
90 E H -1.1109
91 V H 0.0000
92 S H -1.3930
93 R H -2.0880
94 L H 0.0000
95 I H -0.1606
96 S H -0.6471
97 D H -1.1406
98 D H 0.0000
99 T H -0.2134
100 A H 0.0000
101 M H 0.1082
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0421
107 D H 0.0000
108 L H 0.4523
109 G H 0.5364
110 T H 1.6706
111 V H 2.8421
111A F H 2.8932
111B G H 1.5448
112B V H 1.8674
112A L H 1.4662
112 S H 0.0000
113 D H 0.0000
114 A H 0.0000
115 F H 0.0000
116 D H -0.2700
117 I H -0.0868
118 W H 0.0000
119 G H 0.0000
120 Q H -1.3018
121 G H -0.6311
122 T H 0.0000
123 M H 0.1917
124 V H 0.0000
125 T H 0.0939
126 V H 0.0000
127 S H -0.5678
128 S H -0.6298
1 D L -1.6205
2 I L 0.0000
3 V L 0.7626
4 M L 0.0000
5 T L -0.9140
6 Q L -1.4683
7 S L -1.5690
8 P L -1.4133
9 D L -2.3100
10 S L -1.3876
11 L L -0.5878
12 A L -0.2853
13 V L 0.0000
14 S L -0.9045
15 L L -0.2707
16 G L -1.0796
17 E L -2.2030
18 R L -2.5476
19 A L 0.0000
20 T L -0.7977
21 I L 0.0000
22 N L -1.6619
23 C L 0.0000
24 K L -2.3963
25 S L 0.0000
26 S L -0.9990
27 Q L -1.5435
28 S L -0.8251
29 V L 0.0000
30 L L -0.0371
31 Y L 0.1180
32 S L -0.5994
33 S L -0.7102
34 N L -1.0478
35 N L -1.5976
36 K L -1.0289
37 N L -0.3602
38 Y L 0.0000
39 L L 0.0000
40 A L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L -0.8576
45 K L -1.3462
46 P L -0.9400
47 G L -1.4710
48 Q L -2.0815
49 P L -1.3075
50 P L 0.0000
51 K L -1.0639
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.1136
56 W L -0.1784
57 A L 0.0000
65 S L -0.5918
66 T L -0.5264
67 R L -1.3817
68 E L -1.1079
69 S L -0.7491
70 G L -0.9171
71 V L -1.0312
72 P L -1.3116
74 D L -2.2083
75 R L -1.5278
76 F L 0.0000
77 S L -0.8744
78 G L 0.0000
79 S L -0.6954
80 G L -1.1682
83 S L -1.1113
84 G L -1.0077
85 T L -1.6125
86 D L -2.3212
87 F L 0.0000
88 T L -1.0290
89 L L 0.0000
90 T L -0.6608
91 I L 0.0000
92 S L -1.5938
93 S L -1.6411
94 L L 0.0000
95 Q L -1.2094
96 A L -0.6530
97 E L -1.8063
98 D L 0.0000
99 V L 0.0361
100 A L 0.0000
101 V L -0.3335
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 Y L 0.0000
108 Y L 0.5416
109 S L -0.3276
113 T L -0.2503
114 P L -0.6164
115 P L -0.7436
116 L L 0.0000
117 T L 0.0608
118 F L 0.2159
119 G L 0.0000
120 G L -0.9857
121 G L -1.1628
122 T L 0.0000
123 K L -1.4019
124 V L 0.0000
125 E L -0.1905
126 I L 0.2173
127 K L -1.2102
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Laboratory of Theory of Biopolymers 2018