| Chain sequence(s) |
A: NWVNVISDLKKIEDLIQSMHIDATLYTESDVHPSCKVTAMKCFLLELQVISLESGDASIHDTVENLIILANNSLSSNGNVTESGCKECEELEEKNIKEFLQSFVHIVQMFINTS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | VT3A,NK4A |
| Energy difference between WT (input) and mutated protein (by FoldX) | -1.35555 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] FoldX: Building mutant model (00:00:50)
[INFO] FoldX: Starting FoldX energy minimalization (00:01:05)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:42)
[INFO] Main: Simulation completed successfully. (00:01:43)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | N | A | -1.7011 | |
| 2 | W | A | 0.0000 | |
| 3 | T | A | -1.1306 | mutated: VT3A |
| 4 | K | A | -2.2195 | mutated: NK4A |
| 5 | V | A | 0.0000 | |
| 6 | I | A | -1.1874 | |
| 7 | S | A | -1.6418 | |
| 8 | D | A | 0.0000 | |
| 9 | L | A | 0.0000 | |
| 10 | K | A | -3.2694 | |
| 11 | K | A | -2.9559 | |
| 12 | I | A | 0.0000 | |
| 13 | E | A | -3.4848 | |
| 14 | D | A | -3.3964 | |
| 15 | L | A | -1.8486 | |
| 16 | I | A | 0.0000 | |
| 17 | Q | A | -2.2332 | |
| 18 | S | A | -1.1681 | |
| 19 | M | A | -1.0632 | |
| 20 | H | A | -1.6665 | |
| 21 | I | A | -1.5677 | |
| 22 | D | A | -2.3247 | |
| 23 | A | A | -1.5306 | |
| 24 | T | A | -1.5362 | |
| 25 | L | A | 0.0000 | |
| 26 | Y | A | -1.7686 | |
| 27 | T | A | 0.0000 | |
| 28 | E | A | -1.9593 | |
| 29 | S | A | -1.8192 | |
| 30 | D | A | -2.2355 | |
| 31 | V | A | -1.4576 | |
| 32 | H | A | -1.5922 | |
| 33 | P | A | -1.0197 | |
| 34 | S | A | -0.6803 | |
| 35 | C | A | -0.7690 | |
| 36 | K | A | -0.6015 | |
| 37 | V | A | -0.2149 | |
| 38 | T | A | -0.8311 | |
| 39 | A | A | 0.0000 | |
| 40 | M | A | 0.0000 | |
| 41 | K | A | -0.7050 | |
| 42 | C | A | 0.0000 | |
| 43 | F | A | 0.0000 | |
| 44 | L | A | 0.0000 | |
| 45 | L | A | 1.1304 | |
| 46 | E | A | 0.0000 | |
| 47 | L | A | 0.0000 | |
| 48 | Q | A | 0.0146 | |
| 49 | V | A | 0.5839 | |
| 50 | I | A | 0.0000 | |
| 51 | S | A | 0.0000 | |
| 52 | L | A | 0.3849 | |
| 53 | E | A | -1.6093 | |
| 54 | S | A | -1.1406 | |
| 55 | G | A | -0.8865 | |
| 56 | D | A | -1.1138 | |
| 57 | A | A | -0.9181 | |
| 58 | S | A | -1.2060 | |
| 59 | I | A | 0.0000 | |
| 60 | H | A | -2.0539 | |
| 61 | D | A | -2.8922 | |
| 62 | T | A | 0.0000 | |
| 63 | V | A | 0.0000 | |
| 64 | E | A | -2.0170 | |
| 65 | N | A | -1.3311 | |
| 66 | L | A | 0.0000 | |
| 67 | I | A | 0.3598 | |
| 68 | I | A | 1.0251 | |
| 69 | L | A | -0.3442 | |
| 70 | A | A | 0.0000 | |
| 71 | N | A | -0.5217 | |
| 72 | N | A | -1.2895 | |
| 73 | S | A | -1.1598 | |
| 74 | L | A | 0.0000 | |
| 75 | S | A | -1.5248 | |
| 76 | S | A | -1.6137 | |
| 77 | N | A | -1.9361 | |
| 78 | G | A | -1.5891 | |
| 79 | N | A | -1.5063 | |
| 80 | V | A | -0.3469 | |
| 81 | T | A | -0.2642 | |
| 82 | E | A | -0.5300 | |
| 83 | S | A | -0.7322 | |
| 84 | G | A | -1.2090 | |
| 85 | C | A | -1.8027 | |
| 86 | K | A | -3.4170 | |
| 87 | E | A | -3.8138 | |
| 88 | C | A | -2.8732 | |
| 89 | E | A | -3.8293 | |
| 90 | E | A | -4.1609 | |
| 91 | L | A | -3.1958 | |
| 92 | E | A | -3.0462 | |
| 93 | E | A | -2.7353 | |
| 94 | K | A | -2.2013 | |
| 95 | N | A | -2.1670 | |
| 96 | I | A | -1.9237 | |
| 97 | K | A | -2.8151 | |
| 98 | E | A | -2.3420 | |
| 99 | F | A | 0.0000 | |
| 100 | L | A | 0.0000 | |
| 101 | Q | A | -1.8609 | |
| 102 | S | A | 0.0000 | |
| 103 | F | A | 0.0000 | |
| 104 | V | A | -0.6160 | |
| 105 | H | A | -1.3090 | |
| 106 | I | A | 0.0000 | |
| 107 | V | A | 0.0000 | |
| 108 | Q | A | -0.9669 | |
| 109 | M | A | -0.6855 | |
| 110 | F | A | 0.0000 | |
| 111 | I | A | -0.6221 | |
| 112 | N | A | -1.2370 | |
| 113 | T | A | -0.6975 | |
| 114 | S | A | -0.6407 |