| Chain sequence(s) |
H: QVQLQQPGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGPEWIGRIDPNSGDTKYNGKFKSKATLTADKSSSTAYMQLRSLTSEDSAVYYCARPDYWGQGTTLTVSS
L: DIQMTQSPSSLSASLGKRVSLTCRASQEISGHLSWLQQKPDGTIKRLINAAIILDSGVPKRFSGSRSGSDYSLTISSLESEDFADYYCLQYASYPWTFGGGTKLEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:45)
[INFO] Main: Simulation completed successfully. (00:01:46)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.4501 | |
| 2 | V | H | -0.8947 | |
| 3 | Q | H | -1.5329 | |
| 4 | L | H | 0.0000 | |
| 5 | Q | H | -1.9371 | |
| 6 | Q | H | -1.3914 | |
| 7 | P | H | -1.0436 | |
| 8 | G | H | -1.0238 | |
| 9 | A | H | -0.1961 | |
| 11 | E | H | -0.3075 | |
| 12 | L | H | 0.8422 | |
| 13 | V | H | -0.2776 | |
| 14 | K | H | -1.6734 | |
| 15 | P | H | -1.5040 | |
| 16 | G | H | -1.3266 | |
| 17 | A | H | -1.1224 | |
| 18 | S | H | -1.4806 | |
| 19 | V | H | 0.0000 | |
| 20 | K | H | -2.0671 | |
| 21 | L | H | 0.0000 | |
| 22 | S | H | -0.8712 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -1.5029 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -1.0645 | |
| 27 | G | H | -0.9399 | |
| 28 | Y | H | -0.3169 | |
| 29 | T | H | -0.1991 | |
| 30 | F | H | 0.0000 | |
| 35 | T | H | -0.9191 | |
| 36 | S | H | -0.1953 | |
| 37 | Y | H | 0.2800 | |
| 38 | W | H | -0.0635 | |
| 39 | M | H | 0.0000 | |
| 40 | H | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | K | H | 0.0000 | |
| 44 | Q | H | -0.8879 | |
| 45 | R | H | -1.4431 | |
| 46 | P | H | -1.1503 | |
| 47 | G | H | -1.6354 | |
| 48 | R | H | -2.5142 | |
| 49 | G | H | -1.5524 | |
| 50 | P | H | 0.0000 | |
| 51 | E | H | -1.3601 | |
| 52 | W | H | 0.0000 | |
| 53 | I | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | R | H | -0.6361 | |
| 56 | I | H | 0.0000 | |
| 57 | D | H | -1.1449 | |
| 58 | P | H | 0.0000 | |
| 59 | N | H | -2.0130 | |
| 62 | S | H | -1.3840 | |
| 63 | G | H | -1.7277 | |
| 64 | D | H | -1.6143 | |
| 65 | T | H | -1.0481 | |
| 66 | K | H | -1.2283 | |
| 67 | Y | H | -0.9389 | |
| 68 | N | H | 0.0000 | |
| 69 | G | H | -1.9263 | |
| 70 | K | H | -2.5214 | |
| 71 | F | H | 0.0000 | |
| 72 | K | H | -2.5487 | |
| 74 | S | H | -1.6969 | |
| 75 | K | H | -1.6366 | |
| 76 | A | H | 0.0000 | |
| 77 | T | H | -1.0093 | |
| 78 | L | H | 0.0000 | |
| 79 | T | H | -0.5774 | |
| 80 | A | H | -1.1629 | |
| 81 | D | H | -1.6727 | |
| 82 | K | H | -2.2470 | |
| 83 | S | H | -1.1791 | |
| 84 | S | H | -0.9832 | |
| 85 | S | H | -1.1274 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.5457 | |
| 89 | M | H | 0.0000 | |
| 90 | Q | H | -1.4190 | |
| 91 | L | H | 0.0000 | |
| 92 | R | H | -1.8093 | |
| 93 | S | H | -1.2994 | |
| 94 | L | H | 0.0000 | |
| 95 | T | H | -1.4097 | |
| 96 | S | H | -1.4640 | |
| 97 | E | H | -1.9886 | |
| 98 | D | H | 0.0000 | |
| 99 | S | H | -0.6027 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | -0.0557 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | 0.0000 | |
| 107 | P | H | 0.0358 | |
| 116 | D | H | -0.1485 | |
| 117 | Y | H | 0.3568 | |
| 118 | W | H | -0.1908 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.7034 | |
| 121 | G | H | 0.0000 | |
| 122 | T | H | 0.0000 | |
| 123 | T | H | -0.1771 | |
| 124 | L | H | 0.0000 | |
| 125 | T | H | -0.1578 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.6305 | |
| 128 | S | H | -0.8079 | |
| 1 | D | L | -1.9428 | |
| 2 | I | L | -1.6525 | |
| 3 | Q | L | -2.1507 | |
| 4 | M | L | 0.0000 | |
| 5 | T | L | -1.2977 | |
| 6 | Q | L | -1.0744 | |
| 7 | S | L | -0.7572 | |
| 8 | P | L | -0.6239 | |
| 9 | S | L | -0.8850 | |
| 10 | S | L | -1.0353 | |
| 11 | L | L | -0.4765 | |
| 12 | S | L | -0.4780 | |
| 13 | A | L | 0.0000 | |
| 14 | S | L | -0.4347 | |
| 15 | L | L | 0.3315 | |
| 16 | G | L | -1.2731 | |
| 17 | K | L | -2.5019 | |
| 18 | R | L | -2.6984 | |
| 19 | V | L | 0.0000 | |
| 20 | S | L | -0.6614 | |
| 21 | L | L | 0.0000 | |
| 22 | T | L | -0.8595 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.8625 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -2.2344 | |
| 27 | Q | L | -2.8330 | |
| 28 | E | L | -2.8447 | |
| 29 | I | L | 0.0000 | |
| 36 | S | L | -1.2872 | |
| 37 | G | L | -0.7136 | |
| 38 | H | L | -1.0269 | |
| 39 | L | L | 0.0000 | |
| 40 | S | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | L | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | 0.0000 | |
| 45 | K | L | -1.5830 | |
| 46 | P | L | -1.4023 | |
| 47 | D | L | -2.2630 | |
| 48 | G | L | -1.4957 | |
| 49 | T | L | -1.2420 | |
| 50 | I | L | -0.7525 | |
| 51 | K | L | -0.8180 | |
| 52 | R | L | -0.6217 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | N | L | 0.5750 | |
| 56 | A | L | 0.6524 | |
| 57 | A | L | 0.0000 | |
| 65 | I | L | 2.2898 | |
| 66 | I | L | 2.5826 | |
| 67 | L | L | 0.8697 | |
| 68 | D | L | -0.2599 | |
| 69 | S | L | -0.3763 | |
| 70 | G | L | -0.8651 | |
| 71 | V | L | 0.0000 | |
| 72 | P | L | -1.1691 | |
| 74 | K | L | -1.9697 | |
| 75 | R | L | -1.5352 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | 0.1209 | |
| 78 | G | L | 0.7231 | |
| 79 | S | L | -0.0803 | |
| 80 | R | L | -1.3128 | |
| 83 | S | L | -1.2698 | |
| 84 | G | L | -1.4352 | |
| 85 | S | L | -1.9711 | |
| 86 | D | L | -1.6978 | |
| 87 | Y | L | 0.0000 | |
| 88 | S | L | -0.6156 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.6491 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.7286 | |
| 93 | S | L | -1.5114 | |
| 94 | L | L | 0.0000 | |
| 95 | E | L | -1.3547 | |
| 96 | S | L | -0.7255 | |
| 97 | E | L | -1.8651 | |
| 98 | D | L | 0.0000 | |
| 99 | F | L | -0.5343 | |
| 100 | A | L | 0.0000 | |
| 101 | D | L | -1.1784 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | L | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | Y | L | 0.2753 | |
| 108 | A | L | -0.2731 | |
| 109 | S | L | 0.2479 | |
| 114 | Y | L | 0.8245 | |
| 115 | P | L | -0.0703 | |
| 116 | W | L | 0.1769 | |
| 117 | T | L | -0.3767 | |
| 118 | F | L | -0.2484 | |
| 119 | G | L | 0.0000 | |
| 120 | G | L | -1.2448 | |
| 121 | G | L | -1.1524 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -1.8615 | |
| 124 | L | L | 0.0000 | |
| 125 | E | L | -0.7530 | |
| 126 | I | L | 1.0433 | |
| 127 | K | L | -0.7200 |