Project name: 24.D2F8

Status: done

Started: 2026-07-07 08:43:42
Settings
Chain sequence(s) H: QVQLQQPGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGPEWIGRIDPNSGDTKYNGKFKSKATLTADKSSSTAYMQLRSLTSEDSAVYYCARPDYWGQGTTLTVSS
L: DIQMTQSPSSLSASLGKRVSLTCRASQEISGHLSWLQQKPDGTIKRLINAAIILDSGVPKRFSGSRSGSDYSLTISSLESEDFADYYCLQYASYPWTFGGGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:45)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:46)
Show buried residues

Minimal score value
-2.8625
Maximal score value
2.5826
Average score
-0.665
Total score value
-145.64

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.4501
2 V H -0.8947
3 Q H -1.5329
4 L H 0.0000
5 Q H -1.9371
6 Q H -1.3914
7 P H -1.0436
8 G H -1.0238
9 A H -0.1961
11 E H -0.3075
12 L H 0.8422
13 V H -0.2776
14 K H -1.6734
15 P H -1.5040
16 G H -1.3266
17 A H -1.1224
18 S H -1.4806
19 V H 0.0000
20 K H -2.0671
21 L H 0.0000
22 S H -0.8712
23 C H 0.0000
24 K H -1.5029
25 A H 0.0000
26 S H -1.0645
27 G H -0.9399
28 Y H -0.3169
29 T H -0.1991
30 F H 0.0000
35 T H -0.9191
36 S H -0.1953
37 Y H 0.2800
38 W H -0.0635
39 M H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 K H 0.0000
44 Q H -0.8879
45 R H -1.4431
46 P H -1.1503
47 G H -1.6354
48 R H -2.5142
49 G H -1.5524
50 P H 0.0000
51 E H -1.3601
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 R H -0.6361
56 I H 0.0000
57 D H -1.1449
58 P H 0.0000
59 N H -2.0130
62 S H -1.3840
63 G H -1.7277
64 D H -1.6143
65 T H -1.0481
66 K H -1.2283
67 Y H -0.9389
68 N H 0.0000
69 G H -1.9263
70 K H -2.5214
71 F H 0.0000
72 K H -2.5487
74 S H -1.6969
75 K H -1.6366
76 A H 0.0000
77 T H -1.0093
78 L H 0.0000
79 T H -0.5774
80 A H -1.1629
81 D H -1.6727
82 K H -2.2470
83 S H -1.1791
84 S H -0.9832
85 S H -1.1274
86 T H 0.0000
87 A H 0.0000
88 Y H -0.5457
89 M H 0.0000
90 Q H -1.4190
91 L H 0.0000
92 R H -1.8093
93 S H -1.2994
94 L H 0.0000
95 T H -1.4097
96 S H -1.4640
97 E H -1.9886
98 D H 0.0000
99 S H -0.6027
100 A H 0.0000
101 V H -0.0557
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 P H 0.0358
116 D H -0.1485
117 Y H 0.3568
118 W H -0.1908
119 G H 0.0000
120 Q H -1.7034
121 G H 0.0000
122 T H 0.0000
123 T H -0.1771
124 L H 0.0000
125 T H -0.1578
126 V H 0.0000
127 S H -0.6305
128 S H -0.8079
1 D L -1.9428
2 I L -1.6525
3 Q L -2.1507
4 M L 0.0000
5 T L -1.2977
6 Q L -1.0744
7 S L -0.7572
8 P L -0.6239
9 S L -0.8850
10 S L -1.0353
11 L L -0.4765
12 S L -0.4780
13 A L 0.0000
14 S L -0.4347
15 L L 0.3315
16 G L -1.2731
17 K L -2.5019
18 R L -2.6984
19 V L 0.0000
20 S L -0.6614
21 L L 0.0000
22 T L -0.8595
23 C L 0.0000
24 R L -2.8625
25 A L 0.0000
26 S L -2.2344
27 Q L -2.8330
28 E L -2.8447
29 I L 0.0000
36 S L -1.2872
37 G L -0.7136
38 H L -1.0269
39 L L 0.0000
40 S L 0.0000
41 W L 0.0000
42 L L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -1.5830
46 P L -1.4023
47 D L -2.2630
48 G L -1.4957
49 T L -1.2420
50 I L -0.7525
51 K L -0.8180
52 R L -0.6217
53 L L 0.0000
54 I L 0.0000
55 N L 0.5750
56 A L 0.6524
57 A L 0.0000
65 I L 2.2898
66 I L 2.5826
67 L L 0.8697
68 D L -0.2599
69 S L -0.3763
70 G L -0.8651
71 V L 0.0000
72 P L -1.1691
74 K L -1.9697
75 R L -1.5352
76 F L 0.0000
77 S L 0.1209
78 G L 0.7231
79 S L -0.0803
80 R L -1.3128
83 S L -1.2698
84 G L -1.4352
85 S L -1.9711
86 D L -1.6978
87 Y L 0.0000
88 S L -0.6156
89 L L 0.0000
90 T L -0.6491
91 I L 0.0000
92 S L -1.7286
93 S L -1.5114
94 L L 0.0000
95 E L -1.3547
96 S L -0.7255
97 E L -1.8651
98 D L 0.0000
99 F L -0.5343
100 A L 0.0000
101 D L -1.1784
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 L L 0.0000
106 Q L 0.0000
107 Y L 0.2753
108 A L -0.2731
109 S L 0.2479
114 Y L 0.8245
115 P L -0.0703
116 W L 0.1769
117 T L -0.3767
118 F L -0.2484
119 G L 0.0000
120 G L -1.2448
121 G L -1.1524
122 T L 0.0000
123 K L -1.8615
124 L L 0.0000
125 E L -0.7530
126 I L 1.0433
127 K L -0.7200
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018