Project name: 4.28H2

Status: done

Started: 2026-07-07 07:47:22
Settings
Chain sequence(s) H: EVKLVESGGGLVQPGGSLKLSCAASGFTFRDYYMYWVRQTPEKRLEWVAYISNGGGNTDYPDTVKGRFTISRDNAKNTLYLQMSRLNSEDTGMYYCARWRSMGDGSFVYATDYWGQGTSVTVSS
L: DVVMTQTPLSLPVSLGDQASISCRSSQSLVHTYGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFILKISRVEAEDLGIYFCSQSTHVPPTFGAGTKLELK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:26)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:27)
Show buried residues

Minimal score value
-3.1321
Maximal score value
1.2375
Average score
-0.6332
Total score value
-149.4311

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -2.2889
2 V H -1.5811
3 K H -2.0563
4 L H 0.0000
5 V H -0.0144
6 E H 0.0000
7 S H -0.5227
8 G H -0.7834
9 G H -0.3563
11 G H 0.3670
12 L H 1.1562
13 V H 0.0127
14 Q H -1.4472
15 P H -1.7768
16 G H -1.9481
17 G H -1.2928
18 S H -1.2105
19 L H -0.7003
20 K H -1.2693
21 L H 0.0000
22 S H -0.3500
23 C H 0.0000
24 A H -0.5070
25 A H 0.0000
26 S H -1.3878
27 G H -1.4266
28 F H -1.1009
29 T H -1.2689
30 F H 0.0000
35 R H -3.1321
36 D H -2.8149
37 Y H -1.3637
38 Y H -0.6722
39 M H 0.0000
40 Y H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H 0.0000
45 T H 0.0000
46 P H -1.9642
47 E H -2.9630
48 K H -2.8293
49 R H -2.9462
50 L H 0.0000
51 E H -0.8911
52 W H 0.0000
53 V H 0.0000
54 A H 0.0000
55 Y H -0.1113
56 I H 0.0000
57 S H 0.0000
58 N H -2.0001
59 G H -1.9235
62 G H -1.3598
63 G H -1.3614
64 N H -1.6860
65 T H -0.8841
66 D H -0.8643
67 Y H -0.8706
68 P H 0.0000
69 D H -2.4866
70 T H -1.6337
71 V H 0.0000
72 K H -2.5345
74 G H -1.7908
75 R H -1.7597
76 F H 0.0000
77 T H -0.7664
78 I H 0.0000
79 S H -0.3794
80 R H -1.2234
81 D H -1.6356
82 N H -2.3002
83 A H -1.5323
84 K H -2.2130
85 N H -1.9892
86 T H -1.1885
87 L H 0.0000
88 Y H -0.3212
89 L H 0.0000
90 Q H -0.8925
91 M H 0.0000
92 S H -1.5510
93 R H -2.4558
94 L H 0.0000
95 N H -2.1931
96 S H -1.7267
97 E H -2.2335
98 D H 0.0000
99 T H -0.6800
100 G H -0.9797
101 M H -0.1751
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 W H 0.0000
108 R H -0.1227
109 S H -0.5871
110 M H -0.5490
111 G H -1.4979
111A D H -2.0527
111B G H -1.2385
112B S H -0.5011
112A F H -0.0324
112 V H 0.0000
113 Y H 0.1597
114 A H 0.0000
115 T H 0.0000
116 D H 0.0000
117 Y H -0.3242
118 W H 0.0000
119 G H 0.0000
120 Q H -1.1849
121 G H 0.0000
122 T H 0.0000
123 S H -0.1993
124 V H 0.0000
125 T H -0.1261
126 V H 0.0000
127 S H -0.7601
128 S H -0.6743
1 D L -1.2380
2 V L 0.0000
3 V L 0.7728
4 M L 0.0000
5 T L -0.1798
6 Q L 0.0000
7 T L 0.1321
8 P L 0.4169
9 L L 1.2375
10 S L 0.1074
11 L L -0.2240
12 P L -1.0293
13 V L 0.0000
14 S L -0.8011
15 L L -0.1058
16 G L -1.4199
17 D L -1.6354
18 Q L -2.1794
19 A L 0.0000
20 S L -0.6413
21 I L 0.0000
22 S L -0.4721
23 C L 0.0000
24 R L -2.1138
25 S L 0.0000
26 S L -0.9512
27 Q L -1.5076
28 S L -0.8325
29 L L 0.0000
30 V L 0.8030
31 H L 0.5207
32 T L 0.5840
34 Y L 1.1494
35 G L 0.3703
36 N L 0.3036
37 T L 0.2226
38 Y L 0.0000
39 L L 0.0000
40 H L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 L L 0.0000
44 Q L -0.9956
45 K L -1.3941
46 P L -0.8173
47 G L -1.1520
48 Q L -1.5448
49 S L 0.0000
50 P L 0.0000
51 K L -1.4459
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.4896
56 K L -0.5068
57 V L -0.4604
65 S L -0.7318
66 N L -1.1109
67 R L -1.5455
68 F L -0.7330
69 S L -0.5599
70 G L -0.7920
71 V L -0.9569
72 P L -1.2295
74 D L -2.3553
75 R L -2.0606
76 F L 0.0000
77 S L -1.1086
78 G L 0.0000
79 S L -0.5131
80 G L -0.6919
83 S L -0.5439
84 G L -0.6297
85 T L -1.3457
86 D L -1.7384
87 F L 0.0000
88 I L -0.3451
89 L L 0.0000
90 K L -1.3299
91 I L 0.0000
92 S L -2.4322
93 R L -2.9162
94 V L 0.0000
95 E L -1.6031
96 A L -1.0967
97 E L -2.0389
98 D L 0.0000
99 L L -0.7374
100 G L 0.0000
101 I L -0.2826
102 Y L 0.0000
103 F L 0.0000
104 C L 0.0000
105 S L 0.0000
106 Q L 0.0000
107 S L 0.2953
108 T L 0.1865
109 H L 0.1179
114 V L 1.1779
115 P L 0.1447
116 P L 0.0000
117 T L 0.2616
118 F L 0.0573
119 G L 0.0000
120 A L -0.4709
121 G L 0.0000
122 T L 0.0000
123 K L -0.6950
124 L L 0.0000
125 E L -0.9703
126 L L -0.4606
127 K L -1.4056
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Laboratory of Theory of Biopolymers 2018