Project name: 3-g4s-5r3

Status: done

Started: 2025-03-06 08:21:33
Settings
Chain sequence(s) A: FSRPGLPVEYLQVPSPSMGRDIKVQFQSGGNNSPAVYLLDGLRAQDDYNGWDINTPAFEWYYQSGLSIVMPVGGQSSFYSDWYSPACGKAGCQTYKWETFLTSELPQWLSANRAVKPTGSAAIGLSMAGSSAMILAAYHPQQFIYAGSLSALLDPSQGMGPSLIGLAMGDAGGYKAADMWGPSSDPAWERNDPTQQIPKLVANNTRLWVYCGNGTPNELGGANIPAEFLENFVRSSNLKFQDAYNAAGGHNAVFNFPPNGTHSWEYWGAQLNAMKGDLQSSLGAGGGGGSFAVTNDGVI
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:18)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:20)
Show buried residues

Minimal score value
-2.956
Maximal score value
2.5237
Average score
-0.448
Total score value
-133.9557

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 F A 1.5367
2 S A 0.0437
3 R A -1.2564
4 P A -0.8759
5 G A -0.8966
6 L A -0.5677
7 P A -0.2327
8 V A 0.0392
9 E A -0.3303
10 Y A 0.5676
11 L A 0.0000
12 Q A -1.8288
13 V A 0.0000
14 P A -1.6228
15 S A 0.0000
16 P A -0.9979
17 S A -0.6957
18 M A 0.0000
19 G A -1.3413
20 R A -1.9236
21 D A -2.7034
22 I A 0.0000
23 K A -1.3923
24 V A 0.0000
25 Q A 0.0000
26 F A 0.0000
27 Q A 0.0000
28 S A -0.9426
29 G A -1.1179
30 G A -1.6558
31 N A -2.3273
32 N A -2.4266
33 S A 0.0000
34 P A 0.0000
35 A A 0.0000
36 V A 0.0000
37 Y A 0.0000
38 L A 0.0000
39 L A 0.0000
40 D A 0.0000
41 G A 0.0000
42 L A -1.0512
43 R A -2.4840
44 A A 0.0000
45 Q A -2.5006
46 D A -2.9560
47 D A -2.0060
48 Y A -0.4083
49 N A 0.0000
50 G A 0.0000
51 W A 0.0000
52 D A 0.0000
53 I A 0.8737
54 N A -0.0178
55 T A 0.0000
56 P A 0.1132
57 A A 0.0000
58 F A 0.0000
59 E A -0.4713
60 W A -0.2158
61 Y A 0.0000
62 Y A -0.0822
63 Q A -1.1096
64 S A 0.0000
65 G A -1.2644
66 L A 0.0000
67 S A 0.0000
68 I A 0.0000
69 V A 0.0000
70 M A 0.0000
71 P A 0.0000
72 V A 0.0000
73 G A 0.0000
74 G A 0.0000
75 Q A -1.3950
76 S A 0.0000
77 S A 0.0000
78 F A 0.0000
79 Y A 0.0000
80 S A 0.0000
81 D A -0.6435
82 W A 0.0000
83 Y A 0.9393
84 S A 0.0702
85 P A -0.1933
86 A A 0.0000
87 C A -0.5221
88 G A -1.5463
89 K A -1.9926
90 A A -0.9128
91 G A -0.6374
92 C A -0.0147
93 Q A -0.6728
94 T A -0.5124
95 Y A 0.0000
96 K A -0.8861
97 W A 0.0000
98 E A -0.5803
99 T A -0.5209
100 F A 0.0000
101 L A 0.0000
102 T A -0.3792
103 S A -0.5334
104 E A -0.6888
105 L A 0.0000
106 P A 0.0000
107 Q A -1.5293
108 W A -0.8584
109 L A 0.0000
110 S A -1.4771
111 A A -0.9290
112 N A -1.2669
113 R A -1.7037
114 A A -1.7968
115 V A 0.0000
116 K A -1.8481
117 P A -1.2361
118 T A -0.8880
119 G A -0.5353
120 S A 0.0000
121 A A 0.0000
122 A A 0.0000
123 I A 0.0000
124 G A 0.0000
125 L A 0.0000
126 S A 0.0090
127 M A 0.0000
128 A A 0.0000
129 G A 0.0000
130 S A 0.0000
131 S A 0.0000
132 A A 0.0000
133 M A 0.0000
134 I A 0.0000
135 L A 0.0000
136 A A 0.0000
137 A A 0.0000
138 Y A -0.2507
139 H A -0.4175
140 P A -0.9496
141 Q A -1.2627
142 Q A -0.8003
143 F A 0.0000
144 I A -0.2136
145 Y A 0.0000
146 A A 0.0000
147 G A 0.0000
148 S A 0.0000
149 L A 0.0000
150 S A 0.0000
151 A A 0.0000
152 L A 0.3172
153 L A 0.0000
154 D A 0.0000
155 P A 0.0000
156 S A -1.3689
157 Q A -1.3544
158 G A -0.4767
159 M A 0.4806
160 G A 0.0000
161 P A 0.0173
162 S A 0.3942
163 L A 0.9162
164 I A 0.0000
165 G A -0.1041
166 L A 0.6564
167 A A -0.3629
168 M A 0.0000
169 G A -1.4649
170 D A -2.1904
171 A A 0.0000
172 G A 0.0000
173 G A -1.8238
174 Y A 0.0000
175 K A -1.8953
176 A A -0.7666
177 A A -0.6722
178 D A -0.4807
179 M A 0.0000
180 W A 0.0000
181 G A 0.0000
182 P A -0.6323
183 S A -0.9809
184 S A -0.8998
185 D A -1.1480
186 P A -1.2757
187 A A -0.9544
188 W A 0.0000
189 E A -2.6438
190 R A -1.6674
191 N A 0.0000
192 D A 0.0000
193 P A 0.0000
194 T A -1.4198
195 Q A -2.0180
196 Q A 0.0000
197 I A 0.0000
198 P A -1.1036
199 K A -1.4273
200 L A 0.0000
201 V A -1.2767
202 A A -0.9576
203 N A -1.4568
204 N A -1.8250
205 T A 0.0000
206 R A -0.8829
207 L A 0.0000
208 W A 0.0000
209 V A 0.0000
210 Y A 0.0000
211 C A 0.0000
212 G A 0.0000
213 N A -0.7869
214 G A 0.0000
215 T A -1.0429
216 P A -1.1873
217 N A -1.3962
218 E A -1.8296
219 L A -0.6950
220 G A -0.9352
221 G A -1.0581
222 A A -0.6358
223 N A -0.5219
224 I A 1.5481
225 P A 0.7995
226 A A 0.2722
227 E A 0.1942
228 F A 1.6718
229 L A 1.3868
230 E A 0.0000
231 N A -0.6495
232 F A 0.4551
233 V A 0.0000
234 R A -0.3043
235 S A -0.5605
236 S A 0.0000
237 N A 0.0000
238 L A -0.3817
239 K A -1.7344
240 F A 0.0000
241 Q A -1.5439
242 D A -2.5599
243 A A -1.7987
244 Y A 0.0000
245 N A -2.4257
246 A A -1.3447
247 A A -0.9876
248 G A -1.0942
249 G A 0.0000
250 H A -1.6623
251 N A -1.2193
252 A A -0.5877
253 V A 0.2634
254 F A 0.5042
255 N A 0.0807
256 F A 0.1583
257 P A -0.2833
258 P A -0.5978
259 N A -0.8579
260 G A 0.0000
261 T A 0.0000
262 H A -0.7025
263 S A -0.5227
264 W A -0.4932
265 E A -1.1659
266 Y A 0.0000
267 W A 0.0000
268 G A 0.0000
269 A A -0.4726
270 Q A -0.5790
271 L A 0.0000
272 N A -0.8687
273 A A -0.5977
274 M A 0.0000
275 K A -1.0094
276 G A -1.0695
277 D A -0.8166
278 L A 0.0000
279 Q A -1.0152
280 S A -0.8909
281 S A -0.5066
282 L A -0.3866
283 G A -0.9015
284 A A -1.1056
285 G A -1.4313
286 G A -1.3249
287 G A -1.3308
288 G A -0.9679
289 G A -0.3606
290 S A 0.5774
291 F A 2.2016
292 A A 1.5477
293 V A 1.7270
294 T A -0.1484
295 N A -1.6103
296 D A -1.7103
297 G A -0.3503
298 V A 2.0078
299 I A 2.5237
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Laboratory of Theory of Biopolymers 2018