Project name: 431b6b45fb18d45

Status: done

Started: 2024-12-20 12:07:18
Settings
Chain sequence(s) D: VSVALGQTVRITCQGDSLRSYYASWYQQKSGQAPVLVIYSYNNFSGSNSGNTASLTITGAQAEDEADYYCNSRDSSGHHLVFGGGTKLTVL
input PDB
Selected Chain(s) D
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with D chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:27)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:28)
Show buried residues

Minimal score value
-3.7568
Maximal score value
3.6724
Average score
-0.0655
Total score value
-5.9632

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
11 V D 2.2874
12 S D 1.5056
13 V D 2.4298
14 A D 1.5321
15 L D 1.3872
16 G D -0.1189
17 Q D -1.0732
18 T D -0.1504
19 V D 1.0159
20 R D -0.1725
21 I D 1.5412
22 T D 0.7229
23 C D 0.0776
24 Q D -1.4639
25 G D -1.4144
26 D D -1.8690
27 S D -0.5744
28 L D 0.0218
29 R D -0.9701
36 S D 0.3012
37 Y D 1.6207
38 Y D 1.8533
39 A D 1.2592
40 S D 1.1558
41 W D 1.8350
42 Y D 0.9905
43 Q D -1.2935
44 Q D -2.4122
45 K D -2.9419
46 S D -2.0559
47 G D -1.6682
48 Q D -1.7682
49 A D -0.2252
50 P D 0.7145
51 V D 2.6102
52 L D 3.2417
53 V D 3.6724
54 I D 3.1735
55 Y D 2.0990
56 S D 1.4553
65 Y D 0.9984
74 N D -0.9102
75 N D -1.6048
76 F D 1.6611
77 S D 0.0803
78 G D -0.6246
79 S D -1.2476
80 N D -1.7860
83 S D -1.1349
84 G D -0.2039
85 N D -0.4095
86 T D -0.0871
87 A D 0.0454
88 S D 0.4427
89 L D 1.8896
90 T D 1.5807
91 I D 2.4482
92 T D 0.5805
93 G D 0.1543
94 A D -0.5248
95 Q D -1.8364
96 A D -2.1624
97 E D -3.5520
98 D D -3.7568
99 E D -3.2098
100 A D -2.4533
101 D D -2.4207
102 Y D -0.1897
103 Y D 0.1993
104 C D 0.1947
105 N D -1.7628
106 S D -1.6329
107 R D -3.4122
108 D D -3.0010
109 S D -1.8340
110 S D -1.6961
113 G D -1.3656
114 H D -1.1164
115 H D -0.4167
116 L D 1.7114
117 V D 2.0246
118 F D 2.0563
119 G D 0.0032
120 G D -1.1186
121 G D -1.0687
122 T D -0.5537
123 K D -1.1177
124 L D 1.0537
125 T D 1.4271
126 V D 2.9855
127 L D 2.3788
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Laboratory of Theory of Biopolymers 2018