Project name: uuu [mutate: KR1A, KR2A, VN3A]

Status: done

Started: 2024-07-08 03:32:56
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Chain sequence(s) A: KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues KR1A,VN3A,KR2A
Energy difference between WT (input) and mutated protein (by FoldX) 3.14188 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:56)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:01:31)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:14)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:15)
Show buried residues

Minimal score value
-3.9479
Maximal score value
1.7659
Average score
-1.313
Total score value
-233.7204

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 R A -3.6097 mutated: KR1A
2 R A -3.8706 mutated: KR2A
3 N A -2.8789 mutated: VN3A
4 V A -1.7340
5 L A 0.0000
6 G A 0.0000
7 K A -2.4175
8 K A -3.5017
9 G A -3.0365
10 D A -3.3715
11 T A -2.4483
12 V A -1.5617
13 E A -1.8760
14 L A 0.0000
15 T A -1.0580
16 C A 0.0000
17 T A -0.7113
18 A A -2.1441
19 S A -1.7912
20 Q A -2.9236
21 K A -3.3235
22 K A -3.7038
23 S A -2.8699
24 I A -2.1011
25 Q A -2.1790
26 F A 0.0000
27 H A -1.3472
28 W A 0.0000
29 K A -1.3527
30 N A -1.4075
31 S A -1.5801
32 N A -1.8552
33 Q A -1.6423
34 I A -0.3768
35 K A -1.1856
36 I A 0.0000
37 L A 0.0000
38 G A 0.0000
39 N A -0.8735
40 Q A -1.1566
41 G A -0.8188
42 S A -0.1857
43 F A 1.0518
44 L A -0.1614
45 T A -0.5092
46 K A -1.4045
47 G A -1.0546
48 P A -1.1643
49 S A -1.4302
50 K A -2.2261
51 L A 0.0000
52 N A -2.0799
53 D A -2.6402
54 R A -2.1291
55 A A 0.0000
56 D A -1.8109
57 S A 0.0000
58 R A -2.5616
59 R A -2.7372
60 S A -2.0519
61 L A -2.0019
62 W A -2.3369
63 D A -3.3544
64 Q A -3.0244
65 G A 0.0000
66 N A -1.5263
67 F A 0.0000
68 P A 0.0000
69 L A 0.0000
70 I A 0.0000
71 I A 0.0000
72 K A -2.8311
73 N A -2.9993
74 L A 0.0000
75 K A -2.3586
76 I A -1.4606
77 E A -1.3462
78 D A 0.0000
79 S A 0.0000
80 D A -1.0226
81 T A -1.5713
82 Y A 0.0000
83 I A -2.0980
84 C A 0.0000
85 E A -3.2353
86 V A 0.0000
87 E A -3.6370
88 D A -3.7512
89 Q A -3.6156
90 K A -3.9479
91 E A -3.5891
92 E A -3.8198
93 V A 0.0000
94 Q A -2.0086
95 L A 0.0000
96 L A 0.0000
97 V A 0.0000
98 F A 0.0000
99 G A 0.0000
100 L A -1.2584
101 T A -0.9997
102 A A -1.5619
103 N A -1.9285
104 S A -1.8334
105 D A -2.4230
106 T A -1.8507
107 H A -1.1840
108 L A 0.2498
109 L A 1.1596
110 Q A -0.1265
111 G A -1.1482
112 Q A -1.7653
113 S A -1.0089
114 L A 0.0000
115 T A -0.8320
116 L A 0.0000
117 T A -1.3403
118 L A 0.0000
119 E A -1.9476
120 S A -1.3869
121 P A 0.0000
122 P A -0.7417
123 G A -0.7336
124 S A -0.7602
125 S A -0.9556
126 P A 0.0000
127 S A -0.6191
128 V A 0.0000
129 Q A -1.4264
130 C A 0.0000
131 R A -3.2835
132 S A 0.0000
133 P A -2.1820
134 R A -3.4145
135 G A -2.7179
136 K A -3.2312
137 N A -2.7571
138 I A -1.2769
139 Q A -1.7849
140 G A -1.4022
141 G A 0.0000
142 K A -2.2929
143 T A -1.4295
144 L A -0.8473
145 S A -0.5625
146 V A -0.3617
147 S A -1.1903
148 Q A -2.0185
149 L A 0.0000
150 E A -2.2115
151 L A -0.1817
152 Q A -1.5504
153 D A 0.0000
154 S A -0.3463
155 G A -1.1990
156 T A -1.5974
157 W A 0.0000
158 T A -1.9471
159 C A 0.0000
160 T A -1.2061
161 V A 0.0000
162 L A -1.0138
163 Q A -1.5036
164 N A -2.7024
165 Q A -2.7159
166 K A -2.7812
167 K A -2.3950
168 V A -1.4174
169 E A -1.7253
170 F A -1.3683
171 K A -2.3343
172 I A -1.5688
173 D A -2.1591
174 I A 0.0000
175 V A 0.0533
176 V A 0.0000
177 L A 1.7659
178 A A 0.8997
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Laboratory of Theory of Biopolymers 2018