| Chain sequence(s) |
A: GLPVCGETCVGGTCNTPGCVCSWPVCTRN
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:03)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:03)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:03)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:03)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:03)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:12)
[INFO] Main: Simulation completed successfully. (00:00:12)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -0.2439 | |
| 2 | L | A | 1.1162 | |
| 3 | P | A | 1.0558 | |
| 4 | V | A | 1.4590 | |
| 5 | C | A | 0.6205 | |
| 6 | G | A | -0.5050 | |
| 7 | E | A | -0.8326 | |
| 8 | T | A | 0.0903 | |
| 9 | C | A | 0.0000 | |
| 10 | V | A | 1.6393 | |
| 11 | G | A | 0.1434 | |
| 12 | G | A | -0.4114 | |
| 13 | T | A | 0.0344 | |
| 14 | C | A | 0.0000 | |
| 15 | N | A | -0.9396 | |
| 16 | T | A | -0.6372 | |
| 17 | P | A | -0.5754 | |
| 18 | G | A | -0.7740 | |
| 19 | C | A | 0.0000 | |
| 20 | V | A | 0.9173 | |
| 21 | C | A | 0.9303 | |
| 22 | S | A | 1.0434 | |
| 23 | W | A | 1.7140 | |
| 24 | P | A | 0.9258 | |
| 25 | V | A | 1.0458 | |
| 26 | C | A | 0.0000 | |
| 27 | T | A | 0.5829 | |
| 28 | R | A | -0.4058 | |
| 29 | N | A | -1.0997 |