Project name: P5D1H21

Status: done

Started: 2025-08-07 09:44:00
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Chain sequence(s) H: QVQLVESGGGLVQPGGSLRLSCVASGSIFGMSFMNWYRQAPGKEREWVGTISKSGVTSYADSVKGRFTISRDNAKNSMYLQMNSLRAEDTAVYYCNLPRPVMDYWGKGTTVTVSS
input PDB
Selected Chain(s) H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with H chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:42)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:43)
Show buried residues

Minimal score value
-2.7706
Maximal score value
1.3656
Average score
-0.4954
Total score value
-56.974

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.7442
2 V H 0.0000
3 Q H -1.3203
4 L H 0.0000
5 V H 1.1043
6 E H 0.0000
7 S H -0.2624
8 G H -0.9619
9 G H -0.3425
11 G H 0.3059
12 L H 1.2452
13 V H 0.0500
14 Q H -1.2607
15 P H -1.3786
16 G H -1.3221
17 G H -0.8762
18 S H -0.8859
19 L H -0.6276
20 R H -1.5847
21 L H 0.0000
22 S H 0.0072
23 C H 0.0000
24 V H 0.9756
25 A H 0.0000
26 S H -0.5807
27 G H -0.8114
28 S H -0.2910
29 I H 0.0000
30 F H 0.7950
35 G H 0.2208
36 M H 0.0000
37 S H -0.5805
38 F H 0.2341
39 M H 0.0000
40 N H 0.0000
41 W H 0.0000
42 Y H 0.1753
43 R H 0.0000
44 Q H -1.1641
45 A H -1.2914
46 P H -1.0391
47 G H -1.4739
48 K H -2.2452
49 E H -2.7706
50 R H -1.7982
51 E H -1.1979
52 W H -0.0717
53 V H 0.0000
54 G H 0.0000
55 T H 0.5486
56 I H 0.0000
57 S H 0.0063
58 K H -1.2511
59 S H -0.5250
63 G H -0.1481
64 V H 1.3531
65 T H 0.6205
66 S H -0.1780
67 Y H -0.8705
68 A H -1.2614
69 D H -2.4576
70 S H -1.8894
71 V H 0.0000
72 K H -2.5241
74 G H -1.6884
75 R H -1.6282
76 F H 0.0000
77 T H -0.7958
78 I H 0.0000
79 S H -0.2992
80 R H -1.2408
81 D H -1.5856
82 N H -1.9917
83 A H -1.3916
84 K H -2.0332
85 N H -1.1484
86 S H 0.0000
87 M H 0.0000
88 Y H -0.2452
89 L H 0.0000
90 Q H -1.0715
91 M H 0.0000
92 N H -1.2532
93 S H -1.1465
94 L H 0.0000
95 R H -1.9877
96 A H -1.5249
97 E H -2.1165
98 D H 0.0000
99 T H -0.5087
100 A H 0.0000
101 V H 0.1313
102 Y H 0.0000
103 Y H 0.1902
104 C H 0.0000
105 N H 0.0000
106 L H 0.0000
107 P H -0.1821
108 R H -1.1904
109 P H -0.0930
114 V H 1.3656
115 M H 1.0188
116 D H -0.5442
117 Y H -0.2403
118 W H 0.3072
119 G H -0.1230
120 K H -1.2741
121 G H 0.0000
122 T H -0.2417
123 T H 0.1750
124 V H 0.0000
125 T H 0.0513
126 V H 0.0000
127 S H -0.5209
128 S H -0.8005
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Laboratory of Theory of Biopolymers 2018