| Chain sequence(s) |
A: PPIPMTSAFGPAEMNALMTAAMKKMWAIVRPWMQAGIVRGLPEKTIERLKNGPVYGPEEVTVGEVMFVLWTVEHDVVQSMDYHRHWGKMYMLNKQIKRVMRKTMKKIYEANMAAA
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:04:04)
[INFO] Main: Simulation completed successfully. (00:04:05)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | P | A | -0.2633 | |
| 2 | P | A | 0.0333 | |
| 3 | I | A | 0.2861 | |
| 4 | P | A | 0.6482 | |
| 5 | M | A | 0.8765 | |
| 6 | T | A | 0.0039 | |
| 7 | S | A | 0.0001 | |
| 8 | A | A | -0.3308 | |
| 9 | F | A | -0.8020 | |
| 10 | G | A | -1.3920 | |
| 11 | P | A | -1.3425 | |
| 12 | A | A | -0.7323 | |
| 13 | E | A | -1.8005 | |
| 14 | M | A | 0.0000 | |
| 15 | N | A | -0.2505 | |
| 16 | A | A | -0.3919 | |
| 17 | L | A | -0.5014 | |
| 18 | M | A | 0.0000 | |
| 19 | T | A | -1.0871 | |
| 20 | A | A | -1.1089 | |
| 21 | A | A | 0.0000 | |
| 22 | M | A | 0.0000 | |
| 23 | K | A | -2.6942 | |
| 24 | K | A | -2.3936 | |
| 25 | M | A | 0.0000 | |
| 26 | W | A | -1.7674 | |
| 27 | A | A | -1.2252 | |
| 28 | I | A | -0.7186 | |
| 29 | V | A | 0.0000 | |
| 30 | R | A | -1.5318 | |
| 31 | P | A | -1.0741 | |
| 32 | W | A | -0.9484 | |
| 33 | M | A | -1.3490 | |
| 34 | Q | A | -1.7102 | |
| 35 | A | A | -0.8644 | |
| 36 | G | A | -0.9819 | |
| 37 | I | A | -0.9644 | |
| 38 | V | A | 0.0000 | |
| 39 | R | A | -2.3820 | |
| 40 | G | A | -1.8118 | |
| 41 | L | A | 0.0000 | |
| 42 | P | A | -2.0201 | |
| 43 | E | A | -3.1310 | |
| 44 | K | A | -3.2956 | |
| 45 | T | A | 0.0000 | |
| 46 | I | A | -2.3876 | |
| 47 | E | A | -3.5518 | |
| 48 | R | A | -2.4078 | |
| 49 | L | A | 0.0000 | |
| 50 | K | A | -2.9516 | |
| 51 | N | A | -2.3255 | |
| 52 | G | A | 0.0000 | |
| 53 | P | A | 0.0687 | |
| 54 | V | A | 1.4658 | |
| 55 | Y | A | 0.0406 | |
| 56 | G | A | -0.8469 | |
| 57 | P | A | -1.5074 | |
| 58 | E | A | -2.9346 | |
| 59 | E | A | -2.8239 | |
| 60 | V | A | 0.0000 | |
| 61 | T | A | -0.6302 | |
| 62 | V | A | 0.0000 | |
| 63 | G | A | 0.0678 | |
| 64 | E | A | -0.1896 | |
| 65 | V | A | 0.0000 | |
| 66 | M | A | 1.3756 | |
| 67 | F | A | 2.1108 | |
| 68 | V | A | 0.0000 | |
| 69 | L | A | 0.0000 | |
| 70 | W | A | 1.6997 | |
| 71 | T | A | 1.0205 | |
| 72 | V | A | 0.0000 | |
| 73 | E | A | 0.0000 | |
| 74 | H | A | -0.3901 | |
| 75 | D | A | -0.5566 | |
| 76 | V | A | 0.0000 | |
| 77 | V | A | -0.0373 | |
| 78 | Q | A | -1.4189 | |
| 79 | S | A | -1.2895 | |
| 80 | M | A | 0.0000 | |
| 81 | D | A | -1.2888 | |
| 82 | Y | A | 0.1498 | |
| 83 | H | A | -1.2283 | |
| 84 | R | A | -2.0745 | |
| 85 | H | A | -0.7687 | |
| 86 | W | A | 0.7889 | |
| 87 | G | A | 0.3397 | |
| 88 | K | A | -0.2418 | |
| 89 | M | A | 0.0000 | |
| 90 | Y | A | 1.4087 | |
| 91 | M | A | 0.6329 | |
| 92 | L | A | 0.0000 | |
| 93 | N | A | -0.5885 | |
| 94 | K | A | -1.3423 | |
| 95 | Q | A | -1.5685 | |
| 96 | I | A | 0.0000 | |
| 97 | K | A | -2.5144 | |
| 98 | R | A | -3.5731 | |
| 99 | V | A | 0.0000 | |
| 100 | M | A | -2.1843 | |
| 101 | R | A | -3.9863 | |
| 102 | K | A | -3.9609 | |
| 103 | T | A | 0.0000 | |
| 104 | M | A | -2.2286 | |
| 105 | K | A | -3.6669 | |
| 106 | K | A | -3.2640 | |
| 107 | I | A | 0.0000 | |
| 108 | Y | A | -1.5067 | |
| 109 | E | A | -2.3385 | |
| 110 | A | A | -1.1162 | |
| 111 | N | A | 0.0000 | |
| 112 | M | A | -0.1075 | |
| 113 | A | A | -0.1006 | |
| 114 | A | A | 0.0461 | |
| 115 | A | A | 0.2518 |