Project name: query_structure

Status: done

Started: 2026-03-16 23:16:28
Settings
Chain sequence(s) A: FPRPRICNLACRAGIGHKYPFCHCR
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:35)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:36)
Show buried residues

Minimal score value
-2.6447
Maximal score value
1.4923
Average score
-0.707
Total score value
-17.6754

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 F A 1.3600
2 P A -0.4643
3 R A -1.9452
4 P A -1.0365
5 R A -1.7695
6 I A 0.1486
7 C A 0.0000
8 N A -0.7919
9 L A 0.6598
10 A A 0.0000
11 C A -1.0170
12 R A -1.5136
13 A A -0.6499
14 G A -1.4037
15 I A -1.0716
16 G A 0.0000
17 H A -2.1582
18 K A -2.0132
19 Y A -0.1546
20 P A 0.0280
21 F A 1.4923
22 C A 0.0000
23 H A -1.3115
24 C A -1.4187
25 R A -2.6447
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018