| Chain sequence(s) |
A: CYGRKKRRQRRCGGGSRARDGGSGGSQHFYYSVL
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:39)
[INFO] Main: Simulation completed successfully. (00:00:39)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | C | A | 0.4727 | |
| 2 | Y | A | 0.1086 | |
| 3 | G | A | -1.3484 | |
| 4 | R | A | -2.9354 | |
| 5 | K | A | -2.7106 | |
| 6 | K | A | -3.3399 | |
| 7 | R | A | -4.4284 | |
| 8 | R | A | -3.4314 | |
| 9 | Q | A | -3.0280 | |
| 10 | R | A | -4.0526 | |
| 11 | R | A | -3.7515 | |
| 12 | C | A | -2.3915 | |
| 13 | G | A | -1.8445 | |
| 14 | G | A | -1.7290 | |
| 15 | G | A | -1.4306 | |
| 16 | S | A | -1.5287 | |
| 17 | R | A | -2.6125 | |
| 18 | A | A | -2.3718 | |
| 19 | R | A | -3.3314 | |
| 20 | D | A | -2.9697 | |
| 21 | G | A | -2.0949 | |
| 22 | G | A | -2.0983 | |
| 23 | S | A | -2.0257 | |
| 24 | G | A | -1.3388 | |
| 25 | G | A | -1.2735 | |
| 26 | S | A | -1.3472 | |
| 27 | Q | A | -1.7228 | |
| 28 | H | A | -0.6724 | |
| 29 | F | A | 1.0668 | |
| 30 | Y | A | 1.0631 | |
| 31 | Y | A | 1.6298 | |
| 32 | S | A | 1.5211 | |
| 33 | V | A | 2.2896 |