Project name: asdd

Status: done

Started: 2024-06-30 11:41:04
Settings
Chain sequence(s) A: MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDPDNEAYEMPSEEGYQDYEPEA
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:37)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:38)
Show buried residues

Minimal score value
-3.9349
Maximal score value
3.1118
Average score
-0.8835
Total score value
-123.6896

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.8589
2 D A 0.1268
3 V A 1.8586
4 F A 2.0308
5 M A 0.9191
6 K A -0.7746
7 G A -0.5701
8 L A -0.3400
9 S A -1.8750
10 K A -2.7887
11 A A -1.7114
12 K A -2.0194
13 E A -2.1950
14 G A -0.6921
15 V A 0.8987
16 V A 0.8283
17 A A -0.5670
18 A A -0.8582
19 A A -1.1137
20 E A -2.9494
21 K A -3.1911
22 T A -2.1034
23 K A -3.2782
24 Q A -3.1483
25 G A -1.8129
26 V A -0.2529
27 A A -1.3673
28 E A -2.5344
29 A A -1.4055
30 A A -1.4977
31 G A -2.5400
32 K A -3.1959
33 T A -2.2311
34 K A -2.8310
35 E A -1.9943
36 G A -0.5797
37 V A 1.4959
38 L A 1.9469
39 Y A 1.9471
40 V A 0.6447
41 G A -0.4830
42 S A -1.0905
43 K A -2.1511
44 T A -1.8823
45 K A -2.6644
46 E A -2.5753
47 G A -1.5582
48 V A -0.1876
49 V A 0.6556
50 H A -0.1420
51 G A 0.7041
52 V A 2.3723
53 A A 0.8975
54 T A 0.4058
55 V A 0.8489
56 A A -0.7618
57 E A -2.8445
58 K A -3.2556
59 T A -2.3470
60 K A -3.5922
61 E A -3.9349
62 Q A -2.7268
63 V A -0.2626
64 T A -1.4311
65 N A -1.4139
66 V A 0.7830
67 G A 0.5883
68 G A 0.7525
69 A A 1.6567
70 V A 3.1118
71 V A 3.0506
72 T A 1.9769
73 G A 2.1610
74 V A 2.9696
75 T A 1.4702
76 A A 0.9251
77 V A 1.3363
78 A A 0.3327
79 Q A -1.1657
80 K A -1.5472
81 T A -0.6799
82 V A 0.0318
83 E A -1.7263
84 G A -0.9857
85 A A 0.0925
86 G A -0.1845
87 S A 0.3192
88 I A 1.4854
89 A A 0.9223
90 A A 1.2356
91 A A 1.2745
92 T A 1.0202
93 G A 0.9125
94 F A 1.8629
95 V A 1.1823
96 K A -1.7131
97 K A -2.7409
98 D A -3.0747
99 Q A -2.2090
100 L A -0.6707
101 G A -1.6529
102 K A -2.9237
103 N A -3.5657
104 E A -3.8963
105 E A -3.7178
106 G A -2.2185
107 A A -1.7389
108 P A -1.9031
109 Q A -2.6203
110 E A -2.6289
111 G A -1.0035
112 I A 1.0854
113 L A 0.2910
114 E A -1.6807
115 D A -1.4395
116 M A 0.1851
117 P A -0.1150
118 V A 0.0397
119 D A -2.1361
120 P A -2.3244
121 D A -2.9545
122 N A -2.5721
123 E A -2.6475
124 A A -1.2287
125 Y A -0.3114
126 E A -1.9881
127 M A -0.8162
128 P A -1.2850
129 S A -1.6614
130 E A -2.7938
131 E A -2.7542
132 G A -2.0398
133 Y A -0.6750
134 Q A -1.8112
135 D A -2.2074
136 Y A -1.0889
137 E A -2.3465
138 P A -1.8129
139 E A -2.0778
140 A A -1.1262
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018