Project name: Michael Herrera

Status: done

Started: 2024-12-06 15:05:38
Settings
Chain sequence(s) A: STIEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDDEEAEKITTVQAAIDYINGHQA
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:46)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:46)
Show buried residues

Minimal score value
-3.9388
Maximal score value
1.1843
Average score
-1.5404
Total score value
-118.6076

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 S A -0.9861
2 T A -1.1261
3 I A -1.5966
4 E A -2.6126
5 E A -2.7507
6 R A -2.6559
7 V A 0.0000
8 K A -2.5218
9 K A -2.8452
10 I A -1.7427
11 I A 0.0000
12 G A 0.0000
13 E A -2.7182
14 Q A -1.7610
15 L A -1.5175
16 G A -1.6269
17 V A -2.3304
18 K A -3.4335
19 Q A -3.6583
20 E A -3.3041
21 E A -2.9538
22 V A 0.0000
23 T A -1.8046
24 N A -1.4637
25 N A -1.8204
26 A A 0.0000
27 S A -1.4816
28 F A 0.0000
29 V A -1.1462
30 E A -2.5476
31 D A -2.8167
32 L A 0.0000
33 G A -1.6024
34 A A 0.0000
35 D A -1.3874
36 S A -0.0669
37 L A 0.8679
38 D A -0.2595
39 T A 0.2157
40 V A 1.1843
41 E A -0.1123
42 L A 0.0000
43 V A -0.4132
44 M A -0.3841
45 A A -1.1627
46 L A 0.0000
47 E A -2.6245
48 E A -3.1460
49 E A -2.3921
50 F A -2.4463
51 D A -3.3220
52 T A -2.6511
53 E A -2.7586
54 I A 0.0000
55 P A -2.4735
56 D A -3.8983
57 E A -3.9388
58 E A -3.3250
59 A A -2.8632
60 E A -3.6994
61 K A -3.4213
62 I A 0.0000
63 T A -1.1329
64 T A -1.3179
65 V A 0.0000
66 Q A -1.5979
67 A A -1.5395
68 A A 0.0000
69 I A 0.0000
70 D A -2.4330
71 Y A 0.0000
72 I A 0.0000
73 N A -2.0716
74 G A -1.8711
75 H A -2.0822
76 Q A -1.8717
77 A A -1.3869
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Laboratory of Theory of Biopolymers 2018