Project name: Aggrescan3d

Status: done

Started: 2025-12-20 13:10:26
Settings
Chain sequence(s) A: NSDLGTWQMDCTHLEGKIVIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGANFASQEVKMVAWWAGIEHTFGEAMNHHLKNQIDRIREQANSVETIVLMAVHCMNHKRRGGIGDMTPAERLINMITTEQEIQFQ
X: KNSKFKNFRVYYREGRDQLWKGPGELLWKGEGAVLLKVGTDIKVVPRRKAKIIKD
C: NSDLGTWQMDCTHLEGKIVIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGANFASQEVKMVAWWAGIEHTFGVEAMNHHLKNQIDRIREQANSVETIVLMAVHCMNHKRRGGIGDMTPAERLINMITTE
B: NSDLGTWQMDCTHLEGKIVIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGANFASQEVKMVAWWAGIEHTFGEAMNHHLKNQIDRIREQANSVETIVLMAVHCMNHKRRGGIGDMTPAERLINMITTE
D: NSDLGTWQMDCTHLEGKIVIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGANFASQEVKMVAWWAGIEHTFGEAMNHHLKNQIDRIREQANSVETIVLMAVHCMNHKRRGGIGDMTPAERLINMITTE
input PDB
Selected Chain(s) A,X,C,B,D
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:16:04)
[INFO]       Main:     Simulation completed successfully.                                          (00:16:12)
Show buried residues

Minimal score value
-4.1869
Maximal score value
1.5838
Average score
-0.9123
Total score value
-574.721

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
55 N A -2.5507
56 S A 0.0000
57 D A -1.5287
58 L A -0.5990
59 G A 0.0000
60 T A 0.0000
61 W A 0.0000
62 Q A -0.9634
63 M A 0.0000
64 D A -1.5624
65 C A -0.9837
66 T A -0.9156
67 H A -1.7142
68 L A -1.5979
69 E A -2.3371
70 G A -1.7976
71 K A -2.0642
72 I A -1.5526
73 V A 0.0000
74 I A 0.0000
75 V A 0.0000
76 A A 0.0000
77 V A -0.2059
78 H A 0.0000
79 V A -0.0442
80 A A 0.0000
81 S A -0.0411
82 G A 0.0000
83 F A 0.0000
84 I A 0.0000
85 E A 0.0000
86 A A 0.0000
87 E A -0.3833
88 V A -0.7391
89 I A 0.0000
90 P A -1.2769
91 Q A -2.3525
92 E A -2.6797
93 T A -1.6837
94 G A 0.0000
95 R A -1.6260
96 Q A -1.3094
97 T A 0.0000
98 A A 0.0000
99 L A -0.3936
100 F A 0.0000
101 L A 0.0000
102 L A 0.0000
103 K A -0.3170
104 L A 0.0000
105 A A 0.0000
106 G A 0.0000
107 R A 0.0000
108 W A 0.0000
109 P A -0.2019
110 I A 0.0000
111 T A -0.7302
112 H A -1.2073
113 L A 0.0000
114 H A -1.2765
115 T A 0.0000
116 D A -2.3950
117 N A -1.8276
118 G A -1.0411
119 A A -0.6976
120 N A 0.0000
121 F A 0.0000
122 A A -1.1106
123 S A -1.5503
124 Q A -2.3312
125 E A -2.1602
126 V A 0.0000
127 K A -2.2310
128 M A -0.8778
129 V A 0.0000
130 A A 0.0000
131 W A 0.3232
132 W A 0.3046
133 A A 0.0567
134 G A -0.4327
135 I A 0.0000
136 E A -2.0733
137 H A -1.2847
138 T A -0.6279
139 F A -0.1325
140 G A -1.0707
152 E A -2.3192
153 A A -1.2828
154 M A -0.7217
155 N A -1.4709
156 H A -1.8828
157 H A -1.6563
158 L A 0.0000
159 K A -2.0356
160 N A -1.9702
161 Q A 0.0000
162 I A 0.0000
163 D A -3.4509
164 R A -3.2606
165 I A -2.4619
166 R A -2.9686
167 E A -3.2712
168 Q A -2.4418
169 A A -1.7449
170 N A -2.0889
171 S A -1.6110
172 V A 0.0000
173 E A -1.1181
174 T A -0.9802
175 I A 0.0000
176 V A 0.0000
177 L A 0.0000
178 M A 0.0000
179 A A 0.0000
180 V A 0.0000
181 H A -0.4923
182 C A -0.6156
183 M A 0.0000
184 N A 0.0000
185 H A -1.8765
186 K A -3.0479
187 R A -3.9198
188 R A -3.1530
189 G A -1.8558
190 G A -0.7863
191 I A 1.2087
192 G A -0.7023
193 D A -1.9981
194 M A -1.9083
195 T A 0.0000
196 P A 0.0000
197 A A 0.0000
198 E A -1.7336
199 R A -1.0772
200 L A 0.0000
201 I A 0.0000
202 N A -0.8857
203 M A 0.0000
204 I A 0.0000
205 T A 0.0000
206 T A 0.0000
207 E A -1.2364
208 Q A -0.9888
209 E A -0.5404
210 I A 0.0828
211 Q A 0.1635
212 F A 1.2000
213 Q A -0.9340
55 N B -1.7426
56 S B -1.3879
57 D B -1.9403
58 L B -0.9159
59 G B 0.0000
60 T B 0.0000
61 W B 0.0000
62 Q B -0.5718
63 M B 0.0000
64 D B -0.9096
65 C B -0.6274
66 T B -1.0848
67 H B -1.9099
68 L B -1.7823
69 E B -2.5314
70 G B -2.1529
71 K B -2.5011
72 I B -1.8590
73 V B 0.0000
74 I B 0.0000
75 V B 0.0000
76 A B 0.0000
77 V B 0.0000
78 H B 0.0000
79 V B 0.1425
80 A B -0.4492
81 S B 0.0000
82 G B 0.1266
83 F B 0.0000
84 I B 0.0000
85 E B 0.0000
86 A B 0.0000
87 E B -0.4075
88 V B -0.6719
89 I B 0.0000
90 P B -1.4405
91 Q B -2.5106
92 E B -2.7173
93 T B -1.8039
94 G B -1.5884
95 R B -1.7755
96 Q B -1.4233
97 T B 0.0000
98 A B 0.0000
99 L B -0.5055
100 F B 0.0000
101 L B 0.0000
102 L B 0.0000
103 K B -0.4110
104 L B 0.0000
105 A B 0.0000
106 G B 0.0000
107 R B -0.4687
108 W B 0.0000
109 P B -0.0735
110 I B -0.2311
111 T B -0.8178
112 H B -1.1943
113 L B 0.0000
114 H B -0.8931
115 T B -1.6058
116 D B -2.7369
117 N B -2.3744
118 G B -1.3772
119 A B -1.0362
120 N B -1.5083
121 F B -1.2205
122 A B -0.8975
123 S B 0.0000
124 Q B -1.6338
125 E B -1.3245
126 V B 0.0000
127 K B -0.9132
128 M B -0.0400
129 V B 0.0000
130 A B 0.0000
131 W B 0.8794
132 W B 0.5743
133 A B 0.2537
134 G B -0.1859
135 I B 0.0000
136 E B -1.6591
137 H B -1.6640
138 T B -0.2737
139 F B 1.3921
140 G B -0.3027
152 E B -2.1253
153 A B -1.2827
154 M B -1.0571
155 N B 0.0000
156 H B -2.1118
157 H B -1.8985
158 L B 0.0000
159 K B -2.2786
160 N B -2.9085
161 Q B 0.0000
162 I B 0.0000
163 D B -3.6161
164 R B -3.5426
165 I B -2.3764
166 R B -3.1603
167 E B -3.4100
168 Q B -2.5520
169 A B -1.8128
170 N B -2.0872
171 S B -1.5302
172 V B 0.0000
173 E B -0.7033
174 T B 0.0000
175 I B 0.0000
176 V B 0.0000
177 L B 0.0000
178 M B 0.0000
179 A B 0.0000
180 V B 0.0000
181 H B -0.3844
182 C B -0.4880
183 M B 0.0000
184 N B 0.0000
185 H B -1.8083
186 K B -2.5196
187 R B -3.8316
188 R B -3.7001
189 G B -2.2773
190 G B -0.6614
191 I B 0.0736
192 G B -1.0230
193 D B -2.9892
194 M B -1.9278
195 T B 0.0000
196 P B 0.0000
197 A B 0.0000
198 E B -1.1471
199 R B -0.7747
200 L B 0.0000
201 I B 0.0000
202 N B -0.4141
203 M B -0.3835
204 I B -0.4127
205 T B -0.7181
206 T B -1.0579
207 E B -1.8148
55 N C -1.6181
56 S C -1.4053
57 D C -2.2377
58 L C -0.6360
59 G C 0.0000
60 T C -0.8203
61 W C 0.0000
62 Q C -0.5860
63 M C 0.0000
64 D C -1.0685
65 C C -0.5498
66 T C 0.0000
67 H C -1.7352
68 L C -1.6648
69 E C -2.3842
70 G C -1.9207
71 K C -2.0442
72 I C -1.3025
73 V C 0.0000
74 I C 0.0000
75 V C 0.0000
76 A C 0.0000
77 V C 0.0000
78 H C 0.0000
79 V C 0.2184
80 A C -0.5708
81 S C 0.0000
82 G C 0.0000
83 F C 0.0000
84 I C 0.0000
85 E C 0.0000
86 A C 0.0000
87 E C -0.1487
88 V C -0.4245
89 I C 0.0000
90 P C -1.1240
91 Q C -1.8417
92 E C -1.6816
93 T C -1.3272
94 G C -1.5473
95 R C -1.5534
96 Q C -1.1081
97 T C 0.0000
98 A C 0.0000
99 L C 0.0000
100 F C 0.0000
101 L C 0.0000
102 L C 0.0000
103 K C -0.4342
104 L C 0.0000
105 A C 0.0000
106 G C 0.0000
107 R C 0.0000
108 W C 0.0000
109 P C -0.2583
110 I C 0.0000
111 T C -0.8749
112 H C 0.0000
113 L C 0.0000
114 H C -0.9782
115 T C 0.0000
116 D C -2.5577
117 N C -2.2189
118 G C -1.3763
119 A C -1.2905
120 N C 0.0000
121 F C -1.2125
122 A C -1.2152
123 S C 0.0000
124 Q C -2.4863
125 E C -2.7099
126 V C 0.0000
127 K C -2.2885
128 M C -0.9792
129 V C 0.0000
130 A C -0.6729
131 W C 0.2086
132 W C 0.4547
133 A C 0.0619
134 G C -0.3747
135 I C 0.0000
136 E C -2.1327
137 H C -1.1255
138 T C 0.1668
139 F C 1.5838
140 G C 0.6207
151 V C 1.3271
152 E C 0.0162
153 A C -0.6975
154 M C -0.8593
155 N C -1.3295
156 H C -2.0666
157 H C -2.2012
158 L C 0.0000
159 K C -2.4838
160 N C -2.7998
161 Q C -2.3404
162 I C 0.0000
163 D C -4.0445
164 R C -3.7190
165 I C -3.0022
166 R C -4.0842
167 E C -3.7782
168 Q C -2.8558
169 A C -1.9546
170 N C -2.1501
171 S C -1.1642
172 V C -1.0642
173 E C -0.4904
174 T C 0.0000
175 I C 0.0000
176 V C 0.0000
177 L C 0.0000
178 M C 0.0000
179 A C 0.0000
180 V C 0.0000
181 H C -0.4623
182 C C -0.5910
183 M C -1.0814
184 N C 0.0000
185 H C -1.5752
186 K C -2.9815
187 R C -3.3831
188 R C -3.1535
189 G C 0.0000
190 G C -1.0858
191 I C -0.6790
192 G C -1.3434
193 D C -2.4597
194 M C -2.2645
195 T C 0.0000
196 P C 0.0000
197 A C -0.9500
198 E C -1.4837
199 R C -1.0486
200 L C 0.0000
201 I C 0.0000
202 N C -1.7155
203 M C -0.9626
204 I C -0.8053
205 T C -1.0087
206 T C -1.1751
207 E C -1.8771
55 N D -1.6552
56 S D -1.4685
57 D D -1.9478
58 L D -0.8589
59 G D 0.0000
60 T D 0.0000
61 W D 0.0000
62 Q D -1.1100
63 M D 0.0000
64 D D -2.1807
65 C D -1.1638
66 T D -1.3002
67 H D -1.8503
68 L D 0.0000
69 E D -2.5283
70 G D -1.9344
71 K D -2.1218
72 I D -1.4909
73 V D 0.0000
74 I D 0.0000
75 V D 0.0000
76 A D 0.0000
77 V D 0.0000
78 H D 0.0000
79 V D -0.3015
80 A D -0.5601
81 S D -0.4283
82 G D -0.0829
83 F D 0.0000
84 I D 0.0000
85 E D 0.0000
86 A D -0.2470
87 E D -0.2356
88 V D -0.5708
89 I D 0.0000
90 P D -1.1250
91 Q D -2.0011
92 E D -1.9463
93 T D -1.3961
94 G D -1.3734
95 R D -1.6676
96 Q D -1.1646
97 T D 0.0000
98 A D 0.0000
99 L D -0.3124
100 F D 0.0000
101 L D 0.0000
102 L D 0.0000
103 K D -0.2786
104 L D 0.0000
105 A D 0.0000
106 G D 0.0000
107 R D 0.0000
108 W D 0.0000
109 P D -0.0770
110 I D 0.0000
111 T D -1.0015
112 H D -1.4941
113 L D 0.0000
114 H D -1.3923
115 T D 0.0000
116 D D -2.4861
117 N D -2.1745
118 G D -1.4204
119 A D -1.2315
120 N D -1.6410
121 F D 0.0000
122 A D -0.9099
123 S D -1.2128
124 Q D -1.5552
125 E D -1.0672
126 V D 0.0000
127 K D -0.8188
128 M D 0.5133
129 V D 0.0000
130 A D 0.0000
131 W D 0.7878
132 W D 0.7210
133 A D 0.0563
134 G D -0.6218
135 I D 0.0000
136 E D -2.2940
137 H D -1.3652
138 T D -0.4729
139 F D 0.7705
140 G D -0.5561
152 E D -2.0210
153 A D -1.3403
154 M D -1.3662
155 N D -1.7862
156 H D -2.1728
157 H D -2.1054
158 L D 0.0000
159 K D -2.8019
160 N D -3.0650
161 Q D 0.0000
162 I D 0.0000
163 D D -3.5293
164 R D -3.3083
165 I D -2.0319
166 R D -2.7326
167 E D -2.9761
168 Q D -2.0309
169 A D -1.5049
170 N D -1.9225
171 S D -0.9353
172 V D -0.9926
173 E D -0.9106
174 T D -0.7746
175 I D 0.0000
176 V D 0.0000
177 L D 0.0000
178 M D 0.0000
179 A D 0.0000
180 V D 0.0000
181 H D -0.4281
182 C D -0.6597
183 M D 0.0000
184 N D 0.0000
185 H D -1.8017
186 K D -3.1158
187 R D -4.1869
188 R D -3.5925
189 G D -1.7041
190 G D -0.5080
191 I D 1.0401
192 G D -1.0565
193 D D -2.8257
194 M D -1.9644
195 T D -2.4709
196 P D -1.6893
197 A D 0.0000
198 E D -1.5005
199 R D -1.1641
200 L D 0.0000
201 I D 0.0000
202 N D -0.9245
203 M D -0.7987
204 I D -0.7518
205 T D -1.2362
206 T D -0.9032
207 E D -2.1297
216 K X -3.2560
217 N X -2.8330
218 S X -2.0515
219 K X -2.3314
220 F X -1.7053
221 K X -2.8755
222 N X -2.9896
223 F X 0.0000
224 R X -1.9336
225 V X 0.0000
226 Y X 0.0000
227 Y X -0.7383
228 R X -2.2589
229 E X -3.5927
230 G X -3.3616
231 R X -3.4015
232 D X -3.1954
233 Q X -1.9181
234 L X 0.1155
235 W X 0.5501
236 K X -0.7486
237 G X -0.3593
238 P X -0.6557
239 G X 0.0000
240 E X -1.3650
241 L X -0.5981
242 L X -0.3874
243 W X -0.6549
244 K X -1.9428
245 G X -2.1640
246 E X -2.7376
247 G X -1.9208
248 A X -1.2800
249 V X 0.0000
250 L X 0.7541
251 L X 0.0000
252 K X -0.6913
253 V X -0.6618
254 G X -0.8526
255 T X -1.0018
256 D X -1.2842
257 I X 0.4447
258 K X 0.6141
259 V X 1.4900
260 V X 0.0000
261 P X -1.3785
262 R X -2.3640
263 R X -3.3670
264 K X -2.8404
265 A X 0.0000
266 K X -0.8338
267 I X -0.3597
268 I X 0.0000
269 K X -2.1106
270 D X -2.7316
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Laboratory of Theory of Biopolymers 2018