Project name: query_structure

Status: done

Started: 2026-03-16 23:46:05
Settings
Chain sequence(s) A: GTPCGESCVYIPCISGVIGCSCTDKVCYLN
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:07)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:07)
Show buried residues

Minimal score value
-2.042
Maximal score value
3.1785
Average score
0.6672
Total score value
20.0149

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.8020
2 T A -0.3448
3 P A -0.1415
4 C A 0.1464
5 G A -0.3521
6 E A 0.2698
7 S A 0.5446
8 C A 1.2460
9 V A 1.5090
10 Y A 2.5368
11 I A 2.9483
12 P A 1.6647
13 C A 2.0753
14 I A 2.8994
15 S A 1.8776
16 G A 2.2092
17 V A 3.1785
18 I A 3.0824
19 G A 1.2784
20 C A 0.0000
21 S A 0.0998
22 C A -0.3519
23 T A -1.0733
24 D A -2.0420
25 K A -1.1542
26 V A -0.4156
27 C A 0.0000
28 Y A -0.1258
29 L A 0.3894
30 N A -1.1375
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Laboratory of Theory of Biopolymers 2018