Project name: Demupitamab

Status: done

Started: 2026-03-23 04:15:22
Settings
Chain sequence(s) H: QVQLQESGPGLVKPSETLSLTCTVSGGSVSSGDYYWTWIRQSPGKGLEWIGHIYYSGNTNYNPSLKSRLTISIDTSKTQFSLKLSSVTAADTAIYYCVRDRVTGAFDIWGQGTMVTVSS
L: DIQMTQSPSTLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYFCQHFDHLPLAFGGGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:07)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:08)
Show buried residues

Minimal score value
-2.6533
Maximal score value
0.6897
Average score
-0.5977
Total score value
-135.0891

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.7111
2 V H 0.0000
3 Q H -2.0556
4 L H 0.0000
5 Q H -1.8938
6 E H 0.0000
7 S H -0.8737
8 G H -0.5494
9 P H -0.2184
11 G H 0.0855
12 L H 0.4858
13 V H 0.0000
14 K H -1.4913
15 P H -1.1346
16 S H -1.1531
17 E H -1.5279
18 T H -1.1897
19 L H 0.0000
20 S H -0.9080
21 L H 0.0000
22 T H -0.6347
23 C H 0.0000
24 T H -1.1667
25 V H 0.0000
26 S H -1.5400
27 G H -1.4625
28 G H -1.2021
29 S H -0.9118
30 V H 0.0000
31 S H -0.3635
34 S H -0.5652
35 G H -0.7409
36 D H -1.4006
37 Y H -0.2749
38 Y H 0.1603
39 W H 0.0000
40 T H 0.0000
41 W H 0.0000
42 I H 0.0000
43 R H 0.0000
44 Q H -0.3620
45 S H -0.6150
46 P H -0.9165
47 G H -1.1844
48 K H -1.6185
49 G H -1.1935
50 L H 0.0000
51 E H -0.6166
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 H H 0.0000
56 I H 0.0000
57 Y H -0.0372
58 Y H 0.1644
59 S H -0.3419
63 G H -0.7768
64 N H -1.3419
65 T H -0.7512
66 N H -0.7293
67 Y H -0.5292
68 N H -0.7581
69 P H -0.9802
70 S H -0.8437
71 L H 0.0000
72 K H -2.0578
74 S H -1.2879
75 R H -1.3059
76 L H 0.0000
77 T H -0.9683
78 I H 0.0000
79 S H -0.4220
80 I H -0.3919
81 D H -1.1631
82 T H -0.9537
83 S H -1.3054
84 K H -2.1093
85 T H -1.3290
86 Q H -1.2489
87 F H 0.0000
88 S H -0.5266
89 L H 0.0000
90 K H -1.3985
91 L H 0.0000
92 S H -0.9896
93 S H -0.9118
94 V H 0.0000
95 T H -0.4928
96 A H -0.1933
97 A H -0.1652
98 D H 0.0000
99 T H 0.2034
100 A H 0.0000
101 I H 0.6329
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 V H 0.0000
106 R H 0.0000
107 D H 0.0000
108 R H -0.2889
109 V H 0.1267
110 T H 0.0234
113 G H 0.0000
114 A H 0.0000
115 F H 0.0000
116 D H -0.2734
117 I H -0.3900
118 W H -0.6638
119 G H 0.0000
120 Q H -1.9496
121 G H -0.8518
122 T H -0.1858
123 M H 0.6897
124 V H 0.0000
125 T H 0.2212
126 V H 0.0000
127 S H -0.4644
128 S H -0.6041
1 D L -2.2136
2 I L 0.0000
3 Q L -2.0281
4 M L 0.0000
5 T L -1.1703
6 Q L -0.8221
7 S L -0.6489
8 P L -0.4665
9 S L -0.6889
10 T L -0.8780
11 L L -0.7770
12 S L -1.0870
13 A L 0.0000
14 S L -0.7879
15 V L 0.0292
16 G L -0.6159
17 D L -1.6662
18 R L -2.3079
19 V L 0.0000
20 T L -0.6114
21 I L 0.0000
22 T L -0.7672
23 C L 0.0000
24 Q L -2.2661
25 A L 0.0000
26 S L -1.9530
27 Q L -2.4058
28 D L -2.6443
29 I L 0.0000
36 S L -1.1793
37 N L -0.9395
38 Y L -0.0758
39 L L 0.0000
40 N L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L -1.2425
45 K L -1.7161
46 P L -1.1820
47 G L -1.7044
48 K L -2.5947
49 A L -1.5497
50 P L 0.0000
51 K L -1.2047
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.1348
56 D L -0.4849
57 A L 0.0000
65 S L -0.7096
66 N L -0.7599
67 L L 0.0226
68 E L -0.3490
69 T L -0.3062
70 G L -0.4154
71 V L -0.2274
72 P L -0.2992
74 S L -0.4012
75 R L -0.8386
76 F L 0.0000
77 S L -0.4392
78 G L -0.4160
79 S L -0.9077
80 G L -1.2626
83 S L -1.4388
84 G L -1.7483
85 T L -2.2498
86 D L -2.6533
87 F L 0.0000
88 T L -0.7565
89 F L 0.0000
90 T L 0.0000
91 I L 0.0000
92 S L -1.4092
93 S L -1.1606
94 L L 0.0000
95 Q L -0.8436
96 P L -1.0379
97 E L -1.8026
98 D L 0.0000
99 I L -0.6000
100 A L 0.0000
101 T L -0.8361
102 Y L 0.0000
103 F L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 H L 0.0000
107 F L 0.2032
108 D L -0.8177
109 H L -0.7682
114 L L 0.2199
115 P L -0.1868
116 L L 0.0000
117 A L -0.6105
118 F L 0.0000
119 G L 0.0000
120 G L -1.0340
121 G L -0.7143
122 T L 0.0000
123 K L -1.4765
124 V L 0.0000
125 E L -1.9318
126 I L -0.9802
127 K L -1.6958
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Laboratory of Theory of Biopolymers 2018