Project name: PLO_Nb3

Status: done

Started: 2025-07-13 12:23:59
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Chain sequence(s) A: QVELVESGGGSVQAGGSLRLSCVGEGFSFEEYPVGWFRQAPGKGREGVVCIGGGNTWYDDSVAGRFAISSDTAKNTVFLQMNNQKPEDTALYFCARRVEYCAGDGCGRIARCGYYSGINFLGGGTQVTVS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:07)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:08)
Show buried residues

Minimal score value
-2.8638
Maximal score value
1.1364
Average score
-0.8006
Total score value
-104.0783

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.8235
2 V A -1.4135
3 E A -2.0475
4 L A 0.0000
5 V A 0.1053
6 E A -0.0510
7 S A -0.6772
8 G A -1.1989
9 G A -1.2277
10 G A -0.9430
11 S A -0.7748
12 V A -0.8641
13 Q A -1.7166
14 A A -1.7728
15 G A -1.7574
16 G A -1.3755
17 S A -1.5355
18 L A -1.4272
19 R A -2.1996
20 L A 0.0000
21 S A -0.4181
22 C A 0.0000
23 V A -0.3153
24 G A 0.0000
25 E A -2.4006
26 G A -1.8150
27 F A -1.4143
28 S A -1.7882
29 F A 0.0000
30 E A -2.8638
31 E A -2.7647
32 Y A -1.3842
33 P A 0.0000
34 V A 0.0000
35 G A 0.0000
36 W A 0.0000
37 F A 0.0000
38 R A 0.0000
39 Q A -1.6911
40 A A -1.7127
41 P A -1.4190
42 G A -1.6626
43 K A -2.6061
44 G A -2.0450
45 R A -1.7475
46 E A -1.1528
47 G A 0.0000
48 V A 0.0000
49 V A 0.0000
50 C A 0.0000
51 I A -0.0246
52 G A -1.4195
53 G A -1.8276
54 G A -1.4823
55 N A -1.6463
56 T A -0.7536
57 W A -0.5811
58 Y A -0.5601
59 D A -1.5582
60 D A -2.0239
61 S A -1.3843
62 V A 0.0000
63 A A -0.8896
64 G A -1.0089
65 R A -1.2008
66 F A 0.0000
67 A A -0.5228
68 I A 0.0000
69 S A -0.2507
70 S A -0.6892
71 D A -1.1575
72 T A -1.3500
73 A A -1.1895
74 K A -1.8391
75 N A -1.6434
76 T A 0.0000
77 V A 0.0000
78 F A -0.4323
79 L A 0.0000
80 Q A -1.4902
81 M A 0.0000
82 N A -1.8001
83 N A -2.1878
84 Q A 0.0000
85 K A -2.4146
86 P A -1.8750
87 E A -2.3420
88 D A 0.0000
89 T A -1.1849
90 A A 0.0000
91 L A -0.5375
92 Y A 0.0000
93 F A 0.0000
94 C A 0.0000
95 A A 0.0000
96 R A 0.0000
97 R A 0.0095
98 V A -0.0237
99 E A -0.4279
100 Y A 1.0315
101 C A 0.4200
102 A A -0.2077
103 G A -1.0505
104 D A -2.0196
105 G A -1.3973
106 C A -0.3481
107 G A -1.4362
108 R A -2.1907
109 I A -1.2335
110 A A -1.1568
111 R A -1.7237
112 C A 0.0000
113 G A -0.5253
114 Y A 0.8236
115 Y A 1.1364
116 S A 0.5260
117 G A 0.3855
118 I A 0.5722
119 N A 0.1307
120 F A 0.5734
121 L A 0.4374
122 G A -0.0227
123 G A -0.4681
124 G A -0.4530
125 T A -0.7828
126 Q A -1.3748
127 V A 0.0000
128 T A -0.9941
129 V A 0.0000
130 S A -1.1191
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Laboratory of Theory of Biopolymers 2018