Project name: 45451a6bcae1093

Status: done

Started: 2025-07-15 06:54:41
Settings
Chain sequence(s) H: EVQLVESGGGVVQPGGSLRLSCAASGFTFNSYGMHWVRQAPGKGLEWVAFIRYDGGNKYYADSVKGRFTISRDNSKNTLYLQMKSLRAEDTAVYYCANLKDSRYSGSYYDYWGQGTLVTVS
L: VIWMTQSPSSLSASVGDRVTITCQASQDIRFYLNWYQQKPGKAPKLLISDASNMETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLPFTFGPGTKVDFK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:55)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:57)
Show buried residues

Minimal score value
-2.6461
Maximal score value
1.6647
Average score
-0.5509
Total score value
-125.6003

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -2.1322
2 V H -1.3012
3 Q H -1.3381
4 L H 0.0000
5 V H 0.6084
6 E H 0.0000
7 S H -0.2362
8 G H -0.6363
9 G H 0.2138
11 G H 0.9564
12 V H 1.6639
13 V H 0.1490
14 Q H -1.2706
15 P H -1.7687
16 G H -1.6921
17 G H -1.2885
18 S H -1.6126
19 L H -0.8569
20 R H -1.7717
21 L H 0.0000
22 S H -0.2914
23 C H 0.0000
24 A H -0.2547
25 A H 0.0000
26 S H -0.9116
27 G H -1.2380
28 F H -0.5642
29 T H -0.3850
30 F H 0.0000
35 N H -1.3220
36 S H -0.2938
37 Y H 0.3141
38 G H 0.0000
39 M H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.6515
45 A H -1.0462
46 P H -0.8293
47 G H -1.4760
48 K H -2.2131
49 G H -1.3470
50 L H 0.0000
51 E H -0.8820
52 W H 0.0000
53 V H 0.0000
54 A H 0.0000
55 F H 0.0000
56 I H 0.0000
57 R H -0.6762
58 Y H -0.1642
59 D H -1.3765
62 G H -1.3772
63 G H -1.4777
64 N H -1.7338
65 K H -1.1633
66 Y H -0.3195
67 Y H -0.7827
68 A H 0.0000
69 D H -2.2256
70 S H -1.7524
71 V H 0.0000
72 K H -2.5296
74 G H -1.8991
75 R H -1.9912
76 F H 0.0000
77 T H -1.0124
78 I H 0.0000
79 S H -0.6529
80 R H -1.0876
81 D H -1.7424
82 N H -1.9463
83 S H -1.7047
84 K H -2.4421
85 N H -1.8403
86 T H -1.0423
87 L H 0.0000
88 Y H -0.3489
89 L H 0.0000
90 Q H -1.3626
91 M H 0.0000
92 K H -2.5246
93 S H -1.8455
94 L H 0.0000
95 R H -2.5031
96 A H -1.7170
97 E H -2.2314
98 D H 0.0000
99 T H -0.3456
100 A H 0.0000
101 V H 0.6426
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 N H 0.0000
107 L H 0.0000
108 K H -0.3262
109 D H 0.0000
110 S H -0.1537
111 R H -0.3386
111A Y H 0.8212
112A S H 0.0000
112 G H 0.1177
113 S H 0.1998
114 Y H -0.0989
115 Y H 0.0000
116 D H -0.4500
117 Y H 0.1464
118 W H -0.2001
119 G H 0.0000
120 Q H -1.3470
121 G H -0.3116
122 T H 0.5053
123 L H 1.6647
124 V H 0.0000
125 T H 0.3489
126 V H 0.0000
127 S H -0.5867
1 V L 1.6254
2 I L 0.7559
3 W L 1.2859
4 M L 0.0000
5 T L -0.4249
6 Q L 0.0000
7 S L -0.5176
8 P L -0.5560
9 S L -0.7798
10 S L -0.9954
11 L L -0.6528
12 S L -0.8134
13 A L 0.0000
14 S L -0.2270
15 V L 0.7085
16 G L -0.3994
17 D L -1.2678
18 R L -2.1305
19 V L 0.0000
20 T L -0.6554
21 I L 0.0000
22 T L -0.6813
23 C L 0.0000
24 Q L -1.8165
25 A L 0.0000
26 S L -0.7180
27 Q L -2.0176
28 D L -2.6461
29 I L 0.0000
36 R L -1.6058
37 F L 0.3421
38 Y L -0.0538
39 L L 0.0000
40 N L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L -0.7313
44 Q L 0.0000
45 K L -1.6228
46 P L -1.2018
47 G L -1.6657
48 K L -2.4967
49 A L -1.4182
50 P L 0.0000
51 K L -1.1111
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 S L 0.0000
56 D L -0.3505
57 A L 0.0000
65 S L -0.7347
66 N L -1.4240
67 M L -0.6170
68 E L -0.7312
69 T L -0.5286
70 G L -0.4835
71 V L -0.3081
72 P L -0.3602
74 S L -0.4339
75 R L -0.8020
76 F L 0.0000
77 S L -0.5687
78 G L -0.6015
79 S L -0.6355
80 G L -0.8532
83 S L -1.0810
84 G L -1.7926
85 T L -2.0813
86 D L -2.3005
87 F L 0.0000
88 T L -0.6774
89 F L 0.0000
90 T L 0.0000
91 I L 0.0000
92 S L -1.3568
93 S L -1.0683
94 L L 0.0000
95 Q L -0.5202
96 P L -0.7091
97 E L -1.7141
98 D L 0.0000
99 I L -0.5506
100 A L 0.0000
101 T L -0.9004
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 Y L 0.0000
108 D L -1.2179
109 N L -1.0215
114 L L 0.0814
115 P L 0.0143
116 F L 0.0000
117 T L 0.2932
118 F L 0.0000
119 G L 0.0000
120 P L -0.7523
121 G L 0.0000
122 T L 0.0000
123 K L -1.6913
124 V L 0.0000
125 D L -0.8139
126 F L 0.1966
127 K L -1.1249
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Laboratory of Theory of Biopolymers 2018