Project name: 45b43c02f3326d9

Status: done

Started: 2025-08-10 18:53:18
Settings
Chain sequence(s) A: WNPPTFSPALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLPNGRDFHMSVVRARRNDSGTYLCGAISLAPKAQIKESLRAELRV
H: QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYWINWVRQAPGQGLEWMGNIYPGSSLTNYNEKFKNRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARLSTGTFAYWGQGTLVTV
L: DIVMTQSPDSLAVSLGERATINCKSSQSLWDSGNQKNRLTWYQQKPGQPPKLLIYWTSYRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQNDYFYPHTFGGGTKVEIK
input PDB
Selected Chain(s) A,H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:58)
[INFO]       Main:     Simulation completed successfully.                                          (00:04:01)
Show buried residues

Minimal score value
-4.0626
Maximal score value
1.7706
Average score
-0.6858
Total score value
-233.8557

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 W A -0.5948
2 N A -1.4479
3 P A -0.7499
4 P A 0.0000
5 T A -0.2279
6 F A 0.0000
7 S A -0.2242
8 P A 0.0367
9 A A 0.2396
10 L A 0.7598
11 L A 1.0111
12 V A 1.7706
13 V A 0.3023
14 T A -1.6334
15 E A -3.6056
16 G A -3.0443
17 D A -2.7296
18 N A -2.4434
19 A A 0.0000
20 T A -0.6261
21 F A 0.0000
22 T A -0.3651
23 C A 0.0000
24 S A -0.8811
25 F A 0.0000
26 S A -1.5923
27 N A -1.9453
28 T A -1.2232
29 S A -1.4668
30 E A -2.0562
31 S A -0.8809
32 F A -0.3285
33 V A 0.0000
34 L A 0.0000
35 N A 0.0000
36 W A 0.0000
37 Y A 0.0000
38 R A -0.7446
39 M A -0.6598
40 S A -0.8799
41 P A -1.0255
42 S A -1.1822
43 N A -1.4625
44 Q A 0.0000
45 T A 0.0000
46 D A -0.7997
47 K A 0.0000
48 L A 0.0000
49 A A 0.0000
50 A A -0.7442
51 F A -0.8314
52 P A -1.1275
53 E A -2.4873
54 D A -2.1488
55 R A -1.8563
56 S A -1.5618
57 Q A -1.0182
58 P A -0.8638
59 G A -1.0337
60 Q A -1.2311
61 D A -0.9656
62 C A -0.3381
63 R A -0.8490
64 F A 0.0000
65 R A -1.4115
66 V A 0.0000
67 T A -1.0626
68 Q A -1.3960
69 L A -1.1180
70 P A -1.3119
71 N A -2.1762
72 G A -2.4721
73 R A -2.6866
74 D A -1.6353
75 F A 0.0000
76 H A -0.8456
77 M A 0.0000
78 S A -1.0766
79 V A 0.0000
80 V A -1.5931
81 R A -3.2996
82 A A 0.0000
83 R A -4.0626
84 R A -3.7123
85 N A -2.7637
86 D A 0.0000
87 S A -1.4436
88 G A -1.0202
89 T A -0.8592
90 Y A 0.0000
91 L A 0.0000
92 C A 0.0000
93 G A 0.0000
94 A A 0.0000
95 I A 0.0000
96 S A -0.2120
97 L A 0.3734
98 A A -0.1473
99 P A -0.7411
100 K A -1.5263
101 A A -1.0250
102 Q A -1.0176
103 I A 0.0000
104 K A -1.2470
105 E A -0.6918
106 S A -0.0820
107 L A 0.5605
108 R A -1.2552
109 A A 0.0000
110 E A -0.6585
111 L A 0.0000
112 R A -0.9694
113 V A -1.3989
114 Q H -1.8968
115 V H 0.0000
116 Q H -1.7134
117 L H 0.0000
118 V H -0.3188
119 Q H 0.0000
120 S H -0.6111
121 G H -0.5327
122 A H 0.1496
123 E H 0.0091
124 V H 0.9891
125 K H -1.0610
126 K H -2.1496
127 P H -2.1961
128 G H -1.5563
129 A H -1.2302
130 S H -1.4928
131 V H 0.0000
132 K H -2.2200
133 V H 0.0000
134 S H -0.7168
135 C H 0.0000
136 K H -1.2334
137 A H -0.8087
138 S H -1.0294
139 G H -1.2154
140 Y H -0.6596
141 T H -0.1073
142 F H 0.0000
143 T H -0.1762
144 S H 0.1956
145 Y H 0.4253
146 W H 0.5674
147 I H 0.0000
148 N H -0.2370
149 W H 0.0000
150 V H 0.0000
151 R H 0.0000
152 Q H -0.4234
153 A H 0.0000
154 P H -0.9557
155 G H -1.2923
156 Q H -1.7105
157 G H -1.1609
158 L H 0.0000
159 E H -0.5920
160 W H 0.0000
161 M H 0.0000
162 G H 0.0000
163 N H -0.2288
164 I H 0.0000
165 Y H 0.5541
166 P H 0.0000
167 G H -0.0366
168 S H 0.1418
169 S H 0.3688
170 L H 1.2152
171 T H 0.1533
172 N H -1.3370
173 Y H -1.9887
174 N H 0.0000
175 E H -3.6417
176 K H -3.2282
177 F H 0.0000
178 K H -3.5489
179 N H -2.8262
180 R H -1.8903
181 V H 0.0000
182 T H -1.2872
183 M H 0.0000
184 T H -0.3050
185 R H -0.9090
186 D H -1.1331
187 T H -0.7919
188 S H -0.5436
189 T H -0.6827
190 S H -0.8430
191 T H -0.8334
192 V H 0.0000
193 Y H -0.7429
194 M H 0.0000
195 E H -1.8693
196 L H 0.0000
197 S H -1.3054
198 S H -1.1711
199 L H 0.0000
200 R H -2.7228
201 S H -1.7562
202 E H -1.4092
203 D H 0.0000
204 T H -0.4427
205 A H 0.0000
206 V H 0.3525
207 Y H 0.0000
208 Y H 0.0000
209 C H 0.0000
210 A H 0.0000
211 R H 0.0000
212 L H 0.0000
213 S H -0.1794
214 T H -0.2292
215 G H 0.0000
216 T H 0.0797
217 F H -0.0008
218 A H 0.0000
219 Y H 0.0000
220 W H -0.3956
221 G H 0.0000
222 Q H -1.2449
223 G H -0.4108
224 T H 0.0000
225 L H 0.7908
226 V H 0.0000
227 T H 0.1445
228 V H -0.7751
229 D L -1.4867
230 I L 0.0000
231 V L 0.9411
232 M L 0.0000
233 T L -0.5570
234 Q L -1.2599
235 S L -1.4237
236 P L -1.5730
237 D L -2.5253
238 S L -1.9762
239 L L -1.3444
240 A L -1.1383
241 V L 0.0000
242 S L -1.3556
243 L L -0.6158
244 G L -1.6864
245 E L -2.5065
246 R L -2.6056
247 A L 0.0000
248 T L -0.8854
249 I L 0.0000
250 N L -1.7885
251 C L 0.0000
252 K L -2.0674
253 S L 0.0000
254 S L -0.7440
255 Q L -1.0266
256 S L -0.6981
257 L L 0.0000
258 W L -0.0284
259 D L -0.5372
260 S L -0.8532
261 G L -1.1806
262 N L -1.2696
263 Q L -1.5370
264 K L -0.8719
265 N L -0.3859
266 R L 0.0000
267 L L 0.0000
268 T L 0.0000
269 W L 0.0000
270 Y L 0.0000
271 Q L 0.0000
272 Q L -1.1384
273 K L -1.9133
274 P L -1.0588
275 G L -1.2058
276 Q L -1.6595
277 P L -1.2403
278 P L 0.0000
279 K L -1.0287
280 L L 0.0000
281 L L 0.0000
282 I L 0.0000
283 Y L 0.0000
284 W L 0.0000
285 T L 0.0000
286 S L -0.3795
287 Y L -0.0837
288 R L 0.0000
289 E L 0.0000
290 S L 0.0000
291 G L -1.0143
292 V L -0.6703
293 P L -1.1122
294 D L -2.0725
295 R L -1.5745
296 F L 0.0000
297 S L -0.7283
298 G L -0.4061
299 S L -0.8547
300 G L -1.1317
301 S L -0.8358
302 G L -0.7652
303 T L -1.3394
304 D L -2.2185
305 F L 0.0000
306 T L -1.0057
307 L L 0.0000
308 T L -0.6840
309 I L 0.0000
310 S L -1.8119
311 S L -1.7245
312 L L 0.0000
313 Q L -1.6286
314 A L -0.9621
315 E L -2.1418
316 D L 0.0000
317 V L -0.7098
318 A L 0.0000
319 V L -0.9868
320 Y L 0.0000
321 Y L 0.0000
322 C L 0.0000
323 Q L 0.0000
324 N L 0.0000
325 D L 0.0731
326 Y L 0.6741
327 F L 1.2164
328 Y L 0.4081
329 P L 0.0000
330 H L 0.5076
331 T L 0.0000
332 F L 0.0000
333 G L 0.0000
334 G L -1.3582
335 G L 0.0000
336 T L 0.0000
337 K L -2.4089
338 V L 0.0000
339 E L -1.9612
340 I L -0.6502
341 K L -1.6691
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Laboratory of Theory of Biopolymers 2018