Project name: query_structure

Status: done

Started: 2026-03-16 23:04:23
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Chain sequence(s) A: VQLQESGGGLVQAGGSLRLSCAASGRTGSTYDMGWFRQAPGKERESVAAINWDSARTYYASSVRGRFTISRDNAKKTVYLQMNSLKPEDTAVYTCGAGEGGTWDSWGQGTQVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:10)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:10)
Show buried residues

Minimal score value
-4.1187
Maximal score value
1.3399
Average score
-0.9826
Total score value
-113.9826

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
2 V A 1.3399
3 Q A 0.0775
4 L A 0.0000
5 Q A -0.7861
6 E A 0.0000
7 S A -1.0751
8 G A -0.9148
9 G A -0.7511
10 G A 0.0664
11 L A 0.9439
12 V A 0.0000
13 Q A -1.4016
14 A A -1.7063
15 G A -1.5477
16 G A -1.2007
17 S A -1.3173
18 L A -0.9112
19 R A -1.8017
20 L A 0.0000
21 S A -0.7196
22 C A 0.0000
23 A A -1.0449
24 A A 0.0000
25 S A -1.2587
26 G A -1.4875
27 R A -2.1824
28 T A -1.7915
29 G A -1.2593
30 S A -1.2174
31 T A -0.9167
32 Y A -1.0871
33 D A -1.1629
34 M A 0.0000
35 G A 0.0000
36 W A 0.0000
37 F A 0.0000
38 R A 0.0000
39 Q A -2.9060
40 A A -2.2765
41 P A -1.5804
42 G A -2.1109
43 K A -3.6762
44 E A -4.1187
45 R A -3.8765
46 E A -2.9846
47 S A -1.1496
48 V A 0.0000
49 A A 0.0000
50 A A -0.1607
51 I A 0.0000
52 N A -1.5926
52A W A 0.0000
53 D A -2.6040
54 S A -1.8117
55 A A -1.7010
56 R A -2.1658
57 T A -0.6671
58 Y A 0.0512
59 Y A -0.2472
60 A A -0.6429
61 S A -0.8938
62 S A -0.9392
63 V A 0.0000
64 R A -2.1820
65 G A -1.6988
66 R A -1.5496
67 F A 0.0000
68 T A -0.7646
69 I A 0.0000
70 S A -0.8012
71 R A -1.7404
72 D A -2.2408
73 N A -2.8868
74 A A -1.9848
75 K A -2.9114
76 K A -2.8254
77 T A 0.0000
78 V A 0.0000
79 Y A -0.5799
80 L A 0.0000
81 Q A -1.1196
82 M A 0.0000
82A N A -1.5332
82B S A -1.4163
82C L A 0.0000
83 K A -2.8788
84 P A -2.1240
85 E A -2.4662
86 D A 0.0000
87 T A -1.0210
88 A A 0.0000
89 V A -0.4895
90 Y A 0.0000
91 T A -0.8468
92 C A 0.0000
93 G A 0.0000
94 A A 0.0000
95 G A 0.0000
96 E A -1.4946
97 G A -1.0927
98 G A -1.1228
99 T A -1.0256
100 W A -0.9385
101 D A -1.7825
102 S A -0.4445
103 W A -0.1806
104 G A -0.4430
105 Q A -1.0623
106 G A -0.9613
107 T A -0.9630
108 Q A -0.9888
109 V A 0.0000
110 T A -0.3966
111 V A 0.0000
112 S A -0.9224
113 S A -0.9342
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Laboratory of Theory of Biopolymers 2018