Project name: query_structure

Status: done

Started: 2026-03-17 01:12:48
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Chain sequence(s) A: VSDVPRDLEVVAATPTSLLISWDAPAVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGWVLITRSSKPISINYRT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:43)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:43)
Show buried residues

Minimal score value
-3.3731
Maximal score value
3.5745
Average score
-0.5403
Total score value
-50.7907

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 1.7282
2 S A 0.3013
3 D A -0.3344
4 V A -0.8483
5 P A 0.0000
6 R A -3.0121
7 D A -3.3731
8 L A 0.0000
9 E A -2.1175
10 V A 0.0740
11 V A 1.5237
12 A A 0.8851
13 A A 0.2979
14 T A -0.5277
15 P A -1.1364
16 T A -0.9931
17 S A -0.5315
18 L A 0.0000
19 L A 0.7170
20 I A 0.0000
21 S A -1.1308
22 W A 0.0000
23 D A -3.2252
24 A A -1.6050
25 P A 0.0000
26 A A 0.2306
27 V A 0.4024
28 T A -0.2117
29 V A -0.9744
30 R A -1.6174
31 Y A -1.1136
32 Y A 0.0000
33 R A -0.7607
34 I A 0.0000
35 T A -0.5693
36 Y A -0.3473
37 G A 0.0000
38 E A -1.4749
39 T A -1.1960
40 G A -1.2104
41 G A -1.3242
42 N A -1.5148
43 S A -0.8313
44 P A -0.3411
45 V A 0.3883
46 Q A -0.9714
47 E A -1.6966
48 F A -0.6935
49 T A -0.2978
50 V A 0.0000
51 P A -1.2005
52 G A -1.4217
53 S A -1.4037
54 K A -2.2458
55 S A -1.4353
56 T A -0.7868
57 A A 0.0000
58 T A 0.2280
59 I A 0.0000
60 S A -0.6592
61 G A -1.0295
62 L A 0.0000
63 K A -2.3463
64 P A -1.6415
65 G A -1.4161
66 V A -1.3829
67 D A -2.0231
68 Y A 0.0000
69 T A -0.7157
70 I A 0.0000
71 T A -0.3313
72 V A 0.0000
73 Y A -0.4761
74 A A 0.0000
75 V A 0.0000
76 T A 0.0000
77 G A 0.6853
78 W A 2.5274
79 V A 3.2977
80 L A 3.5745
81 I A 2.8163
82 T A 0.5238
83 R A -1.5841
84 S A -1.2978
85 S A 0.0000
86 K A -1.8795
87 P A -0.9283
88 I A -0.5823
89 S A -0.5188
90 I A -0.5483
91 N A -1.7092
92 Y A -1.4503
93 R A -2.5017
94 T A -1.4949
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Laboratory of Theory of Biopolymers 2018