Project name: GGHKGHK12

Status: done

Started: 2026-02-23 04:21:02
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Chain sequence(s) A: GGHKGHK
C: GGHKGHK
B: GGHKGHK
E: GGHKGHK
D: GGHKGHK
G: GGHKGHK
F: GGHKGHK
I: GGHKGHK
H: GGHKGHK
K: GGHKGHK
J: GGHKGHK
L: GGHKGHK
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:02)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:02)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:02)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:02)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:02)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:05)
Show buried residues

Minimal score value
-4.3798
Maximal score value
0.0
Average score
-3.0253
Total score value
-254.1241

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -2.0471
2 G A -2.2902
3 H A -2.7989
4 K A -3.4208
5 G A -3.2690
6 H A -3.5665
7 K A -3.0244
1 G B 0.0000
2 G B 0.0000
3 H B -3.3277
4 K B -4.1875
5 G B -3.0775
6 H B -2.6850
7 K B -2.5528
1 G C -3.7278
2 G C -3.1115
3 H C -3.6117
4 K C -3.8224
5 G C -3.0946
6 H C -3.1029
7 K C -3.3048
1 G D -2.7787
2 G D -2.7859
3 H D -3.4999
4 K D -3.8544
5 G D -3.5110
6 H D -3.4304
7 K D -2.9786
1 G E -2.9998
2 G E -2.8352
3 H E -3.1953
4 K E -3.4603
5 G E -2.9786
6 H E -2.9694
7 K E -2.7564
1 G F -2.3858
2 G F -2.8496
3 H F -2.8592
4 K F -4.0106
5 G F -3.1961
6 H F -3.3072
7 K F -3.0533
1 G G -2.5792
2 G G -2.2864
3 H G -2.6439
4 K G -3.4943
5 G G -3.0273
6 H G -3.0059
7 K G -3.1068
1 G H -2.6487
2 G H -2.4581
3 H H -2.5817
4 K H -3.2995
5 G H -2.7645
6 H H -3.0352
7 K H -3.0577
1 G I -1.8125
2 G I -2.4573
3 H I -2.4627
4 K I -3.1688
5 G I -2.7642
6 H I -3.0918
7 K I -2.8662
1 G J -3.6071
2 G J -3.4403
3 H J -3.2466
4 K J -3.6360
5 G J -3.1377
6 H J -3.0671
7 K J -2.6868
1 G K -2.0054
2 G K -3.0593
3 H K -3.5074
4 K K -4.3798
5 G K -3.7207
6 H K -3.2821
7 K K -2.9123
1 G L -2.6601
2 G L -3.7756
3 H L -3.9924
4 K L -4.1226
5 G L -3.3938
6 H L -3.3790
7 K L -2.7805
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Laboratory of Theory of Biopolymers 2018