| Chain sequence(s) |
A: GGHKGHK
C: GGHKGHK B: GGHKGHK E: GGHKGHK D: GGHKGHK G: GGHKGHK F: GGHKGHK I: GGHKGHK H: GGHKGHK K: GGHKGHK J: GGHKGHK L: GGHKGHK input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:02)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:02)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:02)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:02)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:02)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:03:02)
[INFO] Main: Simulation completed successfully. (00:03:05)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -2.0471 | |
| 2 | G | A | -2.2902 | |
| 3 | H | A | -2.7989 | |
| 4 | K | A | -3.4208 | |
| 5 | G | A | -3.2690 | |
| 6 | H | A | -3.5665 | |
| 7 | K | A | -3.0244 | |
| 1 | G | B | 0.0000 | |
| 2 | G | B | 0.0000 | |
| 3 | H | B | -3.3277 | |
| 4 | K | B | -4.1875 | |
| 5 | G | B | -3.0775 | |
| 6 | H | B | -2.6850 | |
| 7 | K | B | -2.5528 | |
| 1 | G | C | -3.7278 | |
| 2 | G | C | -3.1115 | |
| 3 | H | C | -3.6117 | |
| 4 | K | C | -3.8224 | |
| 5 | G | C | -3.0946 | |
| 6 | H | C | -3.1029 | |
| 7 | K | C | -3.3048 | |
| 1 | G | D | -2.7787 | |
| 2 | G | D | -2.7859 | |
| 3 | H | D | -3.4999 | |
| 4 | K | D | -3.8544 | |
| 5 | G | D | -3.5110 | |
| 6 | H | D | -3.4304 | |
| 7 | K | D | -2.9786 | |
| 1 | G | E | -2.9998 | |
| 2 | G | E | -2.8352 | |
| 3 | H | E | -3.1953 | |
| 4 | K | E | -3.4603 | |
| 5 | G | E | -2.9786 | |
| 6 | H | E | -2.9694 | |
| 7 | K | E | -2.7564 | |
| 1 | G | F | -2.3858 | |
| 2 | G | F | -2.8496 | |
| 3 | H | F | -2.8592 | |
| 4 | K | F | -4.0106 | |
| 5 | G | F | -3.1961 | |
| 6 | H | F | -3.3072 | |
| 7 | K | F | -3.0533 | |
| 1 | G | G | -2.5792 | |
| 2 | G | G | -2.2864 | |
| 3 | H | G | -2.6439 | |
| 4 | K | G | -3.4943 | |
| 5 | G | G | -3.0273 | |
| 6 | H | G | -3.0059 | |
| 7 | K | G | -3.1068 | |
| 1 | G | H | -2.6487 | |
| 2 | G | H | -2.4581 | |
| 3 | H | H | -2.5817 | |
| 4 | K | H | -3.2995 | |
| 5 | G | H | -2.7645 | |
| 6 | H | H | -3.0352 | |
| 7 | K | H | -3.0577 | |
| 1 | G | I | -1.8125 | |
| 2 | G | I | -2.4573 | |
| 3 | H | I | -2.4627 | |
| 4 | K | I | -3.1688 | |
| 5 | G | I | -2.7642 | |
| 6 | H | I | -3.0918 | |
| 7 | K | I | -2.8662 | |
| 1 | G | J | -3.6071 | |
| 2 | G | J | -3.4403 | |
| 3 | H | J | -3.2466 | |
| 4 | K | J | -3.6360 | |
| 5 | G | J | -3.1377 | |
| 6 | H | J | -3.0671 | |
| 7 | K | J | -2.6868 | |
| 1 | G | K | -2.0054 | |
| 2 | G | K | -3.0593 | |
| 3 | H | K | -3.5074 | |
| 4 | K | K | -4.3798 | |
| 5 | G | K | -3.7207 | |
| 6 | H | K | -3.2821 | |
| 7 | K | K | -2.9123 | |
| 1 | G | L | -2.6601 | |
| 2 | G | L | -3.7756 | |
| 3 | H | L | -3.9924 | |
| 4 | K | L | -4.1226 | |
| 5 | G | L | -3.3938 | |
| 6 | H | L | -3.3790 | |
| 7 | K | L | -2.7805 |