| Chain sequence(s) |
H: QVQLQESGPGLVKPSETLSLTCSVSGASIKSYYWSWFRQPPGKRLEWIGYYYYSETSNYNPSLKSRVTMSLDTSKNHFSLRLRSVTAADTAIYYCAKQGGGWSAGFAEFWCAKQGGGWSAGFAEFWGQGLLVTVSS
L: QIVMTQSPATLSVSPGERATLSCRASLSVTNNLAWYQQKPGQAPRLLIYGASTRATGIPVRFSGGGSGTEFTLTISNVQSEDFAVYTCQQYNMWPLSFGGGTKVEIR input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:09)
[INFO] Main: Simulation completed successfully. (00:01:10)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.5842 | |
| 2 | V | H | 0.0000 | |
| 3 | Q | H | -1.7503 | |
| 4 | L | H | 0.0000 | |
| 5 | Q | H | -1.3220 | |
| 6 | E | H | 0.0000 | |
| 7 | S | H | -0.5726 | |
| 8 | G | H | -0.3496 | |
| 9 | P | H | 0.0463 | |
| 11 | G | H | 0.4553 | |
| 12 | L | H | 0.8883 | |
| 13 | V | H | 0.0000 | |
| 14 | K | H | -1.6507 | |
| 15 | P | H | -1.3675 | |
| 16 | S | H | -1.5554 | |
| 17 | E | H | -2.2466 | |
| 18 | T | H | -1.8851 | |
| 19 | L | H | 0.0000 | |
| 20 | S | H | -1.2679 | |
| 21 | L | H | 0.0000 | |
| 22 | T | H | -0.7196 | |
| 23 | C | H | 0.0000 | |
| 24 | S | H | -1.1008 | |
| 25 | V | H | 0.0000 | |
| 26 | S | H | -1.2414 | |
| 27 | G | H | -1.2955 | |
| 28 | A | H | -1.0097 | |
| 29 | S | H | -1.0732 | |
| 30 | I | H | 0.0000 | |
| 35 | K | H | -1.3924 | |
| 36 | S | H | -0.5409 | |
| 37 | Y | H | 0.1617 | |
| 38 | Y | H | 0.0910 | |
| 39 | W | H | 0.0000 | |
| 40 | S | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | F | H | 0.0000 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -0.9621 | |
| 45 | P | H | -0.9901 | |
| 46 | P | H | -1.0357 | |
| 47 | G | H | -1.6737 | |
| 48 | K | H | -2.7310 | |
| 49 | R | H | -2.3101 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.9311 | |
| 52 | W | H | 0.0000 | |
| 53 | I | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | Y | H | 0.0000 | |
| 56 | Y | H | 0.0000 | |
| 57 | Y | H | -0.2159 | |
| 58 | Y | H | -0.5443 | |
| 59 | S | H | -0.7933 | |
| 63 | E | H | -1.4092 | |
| 64 | T | H | -0.6938 | |
| 65 | S | H | -0.4986 | |
| 66 | N | H | -0.5556 | |
| 67 | Y | H | -0.5974 | |
| 68 | N | H | 0.0000 | |
| 69 | P | H | -1.1092 | |
| 70 | S | H | -0.8863 | |
| 71 | L | H | 0.0000 | |
| 72 | K | H | -2.0565 | |
| 74 | S | H | -1.3823 | |
| 75 | R | H | -1.6794 | |
| 76 | V | H | 0.0000 | |
| 77 | T | H | -1.2538 | |
| 78 | M | H | 0.0000 | |
| 79 | S | H | -0.7083 | |
| 80 | L | H | -0.9435 | |
| 81 | D | H | -1.4421 | |
| 82 | T | H | -1.3741 | |
| 83 | S | H | -1.3575 | |
| 84 | K | H | -2.2447 | |
| 85 | N | H | -1.8424 | |
| 86 | H | H | -1.3807 | |
| 87 | F | H | 0.0000 | |
| 88 | S | H | -0.7301 | |
| 89 | L | H | 0.0000 | |
| 90 | R | H | -2.1883 | |
| 91 | L | H | 0.0000 | |
| 92 | R | H | -1.9210 | |
| 93 | S | H | -1.5916 | |
| 94 | V | H | 0.0000 | |
| 95 | T | H | -0.6475 | |
| 96 | A | H | -0.2046 | |
| 97 | A | H | 0.0538 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | 0.2611 | |
| 100 | A | H | 0.0000 | |
| 101 | I | H | 0.5120 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | K | H | 0.0000 | |
| 107 | Q | H | 0.0000 | |
| 108 | G | H | 0.0363 | |
| 109 | G | H | 0.3067 | |
| 110 | G | H | 0.4398 | |
| 111 | W | H | 1.0709 | |
| 111A | S | H | 0.5070 | |
| 111B | A | H | 0.3627 | |
| 111C | G | H | 0.0954 | |
| 111D | F | H | 0.4453 | |
| 111E | A | H | -0.3021 | |
| 111F | E | H | -0.5578 | |
| 111G | F | H | 1.5166 | |
| 111H | W | H | 1.3128 | |
| 112I | C | H | 0.3917 | |
| 112H | A | H | -0.4898 | |
| 112G | K | H | -1.9999 | |
| 112F | Q | H | -2.0853 | |
| 112E | G | H | -1.5983 | |
| 112D | G | H | -0.8124 | |
| 112C | G | H | 0.1353 | |
| 112B | W | H | 0.8279 | |
| 112A | S | H | 0.0000 | |
| 112 | A | H | 0.2507 | |
| 113 | G | H | 0.0000 | |
| 114 | F | H | 0.0000 | |
| 115 | A | H | 0.0000 | |
| 116 | E | H | -0.4643 | |
| 117 | F | H | -0.3172 | |
| 118 | W | H | -0.5835 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.5070 | |
| 121 | G | H | -0.5357 | |
| 122 | L | H | 0.2135 | |
| 123 | L | H | 0.8785 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | 0.3938 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.4067 | |
| 128 | S | H | -0.5730 | |
| 1 | Q | L | -0.4947 | |
| 2 | I | L | 0.0000 | |
| 3 | V | L | 0.9914 | |
| 4 | M | L | 0.0000 | |
| 5 | T | L | -0.6706 | |
| 6 | Q | L | -0.8750 | |
| 7 | S | L | -0.8002 | |
| 8 | P | L | -0.4443 | |
| 9 | A | L | -0.3687 | |
| 10 | T | L | -0.4625 | |
| 11 | L | L | -0.1414 | |
| 12 | S | L | -0.3316 | |
| 13 | V | L | 0.0000 | |
| 14 | S | L | -1.0625 | |
| 15 | P | L | -1.4240 | |
| 16 | G | L | -1.8823 | |
| 17 | E | L | -2.3479 | |
| 18 | R | L | -2.8252 | |
| 19 | A | L | 0.0000 | |
| 20 | T | L | -0.6243 | |
| 21 | L | L | 0.0000 | |
| 22 | S | L | -0.9325 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.0747 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | 0.1625 | |
| 27 | L | L | 0.8904 | |
| 28 | S | L | -0.2116 | |
| 29 | V | L | 0.0000 | |
| 36 | T | L | -0.8382 | |
| 37 | N | L | -1.4839 | |
| 38 | N | L | -0.8258 | |
| 39 | L | L | 0.0000 | |
| 40 | A | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | -0.5368 | |
| 44 | Q | L | -0.7892 | |
| 45 | K | L | -1.2241 | |
| 46 | P | L | -0.8306 | |
| 47 | G | L | -1.3105 | |
| 48 | Q | L | -1.7639 | |
| 49 | A | L | -1.1065 | |
| 50 | P | L | 0.0000 | |
| 51 | R | L | -1.0016 | |
| 52 | L | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | -0.1448 | |
| 56 | G | L | -0.5999 | |
| 57 | A | L | 0.0000 | |
| 65 | S | L | -0.7580 | |
| 66 | T | L | -0.5768 | |
| 67 | R | L | -0.5846 | |
| 68 | A | L | 0.0000 | |
| 69 | T | L | -0.5191 | |
| 70 | G | L | -0.3353 | |
| 71 | I | L | -0.0114 | |
| 72 | P | L | 0.4608 | |
| 74 | V | L | 1.3750 | |
| 75 | R | L | -0.1235 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.1083 | |
| 78 | G | L | -0.5029 | |
| 79 | G | L | -0.8754 | |
| 80 | G | L | -1.4485 | |
| 83 | S | L | -1.4698 | |
| 84 | G | L | -0.9498 | |
| 85 | T | L | -1.1637 | |
| 86 | E | L | -2.0060 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -0.8461 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.7334 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.7479 | |
| 93 | N | L | -2.5254 | |
| 94 | V | L | 0.0000 | |
| 95 | Q | L | -1.5950 | |
| 96 | S | L | -0.9245 | |
| 97 | E | L | -1.8637 | |
| 98 | D | L | 0.0000 | |
| 99 | F | L | -0.2938 | |
| 100 | A | L | 0.0000 | |
| 101 | V | L | -0.1461 | |
| 102 | Y | L | 0.0000 | |
| 103 | T | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | Y | L | 0.0000 | |
| 108 | N | L | -0.0821 | |
| 109 | M | L | 0.5254 | |
| 114 | W | L | 0.4437 | |
| 115 | P | L | 0.0000 | |
| 116 | L | L | 0.0000 | |
| 117 | S | L | 0.0000 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | G | L | -1.0139 | |
| 121 | G | L | -0.9636 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -0.8466 | |
| 124 | V | L | 0.0000 | |
| 125 | E | L | -0.0206 | |
| 126 | I | L | 0.7414 | |
| 127 | R | L | -1.0127 |