Project name: query_structure

Status: done

Started: 2026-03-17 01:00:12
Settings
Chain sequence(s) A: RWCVYAYVRIRGVLVRYRRCW
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:16)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:16)
Show buried residues

Minimal score value
-1.0735
Maximal score value
2.0383
Average score
0.5996
Total score value
12.591

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 R A -0.6666
2 W A 1.1168
3 C A 1.2848
4 V A 1.7028
5 Y A 0.9554
6 A A 1.0186
7 Y A 1.8019
8 V A 1.3508
9 R A -0.1820
10 I A 0.2378
11 R A -1.0475
12 G A -0.2615
13 V A 1.5020
14 L A 2.0383
15 V A 1.1836
16 R A -0.0671
17 Y A 0.4553
18 R A -1.0735
19 R A -0.8371
20 C A 0.7750
21 W A 1.3032
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Laboratory of Theory of Biopolymers 2018