| Chain sequence(s) |
A: RWCVYAYVRIRGVLVRYRRCW
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:16)
[INFO] Main: Simulation completed successfully. (00:00:16)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | R | A | -0.6666 | |
| 2 | W | A | 1.1168 | |
| 3 | C | A | 1.2848 | |
| 4 | V | A | 1.7028 | |
| 5 | Y | A | 0.9554 | |
| 6 | A | A | 1.0186 | |
| 7 | Y | A | 1.8019 | |
| 8 | V | A | 1.3508 | |
| 9 | R | A | -0.1820 | |
| 10 | I | A | 0.2378 | |
| 11 | R | A | -1.0475 | |
| 12 | G | A | -0.2615 | |
| 13 | V | A | 1.5020 | |
| 14 | L | A | 2.0383 | |
| 15 | V | A | 1.1836 | |
| 16 | R | A | -0.0671 | |
| 17 | Y | A | 0.4553 | |
| 18 | R | A | -1.0735 | |
| 19 | R | A | -0.8371 | |
| 20 | C | A | 0.7750 | |
| 21 | W | A | 1.3032 |