Project name: 22-7.pdb

Status: done

Started: 2026-03-19 06:08:08
Settings
Chain sequence(s) H: QVQLVESGGGLVQPGGSLRLSCAASGSISSHNDMSWYRQAPGKQLELVAFIASGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTALYYCNSRTYDGEKTYWGQGTTVTVSS
input PDB
Selected Chain(s) H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with H chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:56)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:57)
Show buried residues

Minimal score value
-2.9534
Maximal score value
1.2272
Average score
-0.6749
Total score value
-78.9689

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.6194
2 V H -0.9743
3 Q H -1.0973
4 L H 0.0000
5 V H 1.1238
6 E H 0.3392
7 S H -0.4058
8 G H -1.0080
9 G H -0.4132
11 G H 0.3219
12 L H 1.2272
13 V H 0.0210
14 Q H -1.3702
15 P H -1.4640
16 G H -1.4271
17 G H -0.9756
18 S H -1.0377
19 L H -0.7960
20 R H -1.9112
21 L H 0.0000
22 S H -0.3080
23 C H 0.0000
24 A H 0.0269
25 A H -0.3273
26 S H -0.7389
27 G H -0.9246
28 S H -1.0014
29 I H 0.0000
30 S H -1.6372
35 S H -1.1453
36 H H -1.2669
37 N H -0.8402
38 D H -0.7055
39 M H 0.0000
40 S H 0.0000
41 W H 0.0000
42 Y H 0.5530
43 R H 0.0000
44 Q H -0.8981
45 A H 0.0000
46 P H -1.1540
47 G H -1.2362
48 K H -1.7042
49 Q H -1.5999
50 L H -0.3125
51 E H -0.2490
52 L H 0.9345
53 V H 0.0000
54 A H 0.0000
55 F H 0.8910
56 I H 0.0000
57 A H -0.5344
58 S H -1.2255
59 G H -0.9961
63 G H -0.7468
64 S H -0.2055
65 T H 0.5018
66 Y H 1.1161
67 Y H 0.0866
68 A H -0.7942
69 D H -2.2958
70 S H -1.6160
71 V H 0.0000
72 K H -2.3522
74 G H -1.6924
75 R H -1.4470
76 F H 0.0000
77 T H -0.6116
78 I H 0.0000
79 S H -0.4643
80 R H -1.1883
81 D H -1.7645
82 N H -2.3208
83 S H -1.8586
84 K H -2.5327
85 N H -1.8422
86 T H -0.9685
87 L H 0.0000
88 Y H -0.3768
89 L H 0.0000
90 Q H -1.2231
91 M H 0.0000
92 N H -1.3829
93 S H -1.2532
94 L H 0.0000
95 R H -2.2643
96 A H -1.6798
97 E H -2.2183
98 D H 0.0000
99 T H -0.6539
100 A H 0.0000
101 L H 0.1480
102 Y H 0.0000
103 Y H 0.4498
104 C H 0.0000
105 N H 0.0000
106 S H 0.0000
107 R H -0.9066
108 T H -1.1948
109 Y H -0.9053
110 D H -2.3749
113 G H -2.2874
114 E H -2.8573
115 K H -2.9534
116 T H -1.4503
117 Y H -0.7287
118 W H 0.2235
119 G H -0.0078
120 Q H -0.8066
121 G H -0.2193
122 T H 0.0000
123 T H -0.0199
124 V H 0.0000
125 T H 0.0107
126 V H 0.0000
127 S H -0.5963
128 S H -0.5766
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018