| Chain sequence(s) |
A: FFKGHFG
C: FFKGHFG B: FFKGHFG E: FFKGHFG D: FFKGHFG G: FFKGHFG F: FFKGHFG I: FFKGHFG H: FFKGHFG K: FFKGHFG J: FFKGHFG M: FFKGHFG L: FFKGHFG O: FFKGHFG N: FFKGHFG Q: FFKGHFG P: FFKGHFG S: FFKGHFG R: FFKGHFG T: FFKGHFG input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:09:31)
[INFO] Main: Simulation completed successfully. (00:09:36)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 1.2437 | |
| 2 | F | A | 0.0000 | |
| 3 | K | A | -1.9372 | |
| 4 | G | A | 0.0000 | |
| 5 | H | A | -1.8042 | |
| 6 | F | A | 0.0000 | |
| 7 | G | A | -0.9048 | |
| 1 | F | B | 1.9558 | |
| 2 | F | B | 0.0000 | |
| 3 | K | B | -1.6913 | |
| 4 | G | B | -1.8000 | |
| 5 | H | B | -1.9550 | |
| 6 | F | B | 0.0000 | |
| 7 | G | B | -1.0428 | |
| 1 | F | C | 2.3160 | |
| 2 | F | C | 0.0000 | |
| 3 | K | C | -1.6717 | |
| 4 | G | C | 0.0000 | |
| 5 | H | C | -2.3526 | |
| 6 | F | C | 0.0000 | |
| 7 | G | C | -0.8279 | |
| 1 | F | D | 2.4659 | |
| 2 | F | D | 1.0005 | |
| 3 | K | D | -1.5762 | |
| 4 | G | D | -1.7873 | |
| 5 | H | D | -1.8740 | |
| 6 | F | D | 0.2211 | |
| 7 | G | D | -0.3155 | |
| 1 | F | E | 2.5978 | |
| 2 | F | E | 1.1134 | |
| 3 | K | E | -1.3113 | |
| 4 | G | E | -1.4487 | |
| 5 | H | E | -1.5231 | |
| 6 | F | E | 0.5173 | |
| 7 | G | E | -0.2173 | |
| 1 | F | F | 2.6186 | |
| 2 | F | F | 0.0000 | |
| 3 | K | F | -1.1360 | |
| 4 | G | F | -1.4870 | |
| 5 | H | F | -1.5376 | |
| 6 | F | F | 0.0000 | |
| 7 | G | F | -0.6328 | |
| 1 | F | G | 1.4315 | |
| 2 | F | G | 0.0000 | |
| 3 | K | G | -1.4633 | |
| 4 | G | G | -1.4791 | |
| 5 | H | G | -1.4736 | |
| 6 | F | G | 0.0000 | |
| 7 | G | G | -0.7909 | |
| 1 | F | H | 1.2762 | |
| 2 | F | H | 0.0000 | |
| 3 | K | H | -1.4492 | |
| 4 | G | H | 0.0000 | |
| 5 | H | H | -1.3201 | |
| 6 | F | H | 0.0000 | |
| 7 | G | H | -0.8493 | |
| 1 | F | I | 1.1385 | |
| 2 | F | I | 0.0000 | |
| 3 | K | I | -1.3573 | |
| 4 | G | I | -1.4332 | |
| 5 | H | I | -1.3552 | |
| 6 | F | I | 0.0000 | |
| 7 | G | I | -0.9178 | |
| 1 | F | J | 1.2294 | |
| 2 | F | J | 0.0000 | |
| 3 | K | J | -1.2897 | |
| 4 | G | J | -1.3086 | |
| 5 | H | J | -1.3043 | |
| 6 | F | J | 0.0000 | |
| 7 | G | J | -0.8365 | |
| 1 | F | K | 1.4498 | |
| 2 | F | K | 0.0000 | |
| 3 | K | K | -1.3673 | |
| 4 | G | K | -1.4634 | |
| 5 | H | K | -1.3264 | |
| 6 | F | K | 0.0000 | |
| 7 | G | K | -0.8172 | |
| 1 | F | L | 1.2850 | |
| 2 | F | L | 0.0000 | |
| 3 | K | L | -1.5066 | |
| 4 | G | L | -1.7102 | |
| 5 | H | L | -1.5288 | |
| 6 | F | L | 0.0000 | |
| 7 | G | L | -0.9435 | |
| 1 | F | M | 1.5326 | |
| 2 | F | M | 0.0000 | |
| 3 | K | M | -1.5480 | |
| 4 | G | M | -1.6862 | |
| 5 | H | M | -1.5042 | |
| 6 | F | M | 0.0000 | |
| 7 | G | M | -0.5522 | |
| 1 | F | N | 0.9361 | |
| 2 | F | N | 0.0000 | |
| 3 | K | N | -2.0870 | |
| 4 | G | N | 0.0000 | |
| 5 | H | N | -2.0538 | |
| 6 | F | N | 0.0000 | |
| 7 | G | N | -0.6797 | |
| 1 | F | O | 1.9462 | |
| 2 | F | O | 0.1871 | |
| 3 | K | O | -1.7535 | |
| 4 | G | O | -1.3177 | |
| 5 | H | O | -1.2978 | |
| 6 | F | O | 0.3887 | |
| 7 | G | O | -0.2486 | |
| 1 | F | P | 1.5478 | |
| 2 | F | P | 0.0000 | |
| 3 | K | P | -2.0765 | |
| 4 | G | P | -1.5718 | |
| 5 | H | P | -1.7640 | |
| 6 | F | P | 0.0706 | |
| 7 | G | P | -0.3846 | |
| 1 | F | Q | 0.7891 | |
| 2 | F | Q | 0.0000 | |
| 3 | K | Q | -2.0210 | |
| 4 | G | Q | -1.9625 | |
| 5 | H | Q | -1.7172 | |
| 6 | F | Q | 0.0000 | |
| 7 | G | Q | -0.9222 | |
| 1 | F | R | 1.1108 | |
| 2 | F | R | 0.0000 | |
| 3 | K | R | -1.9369 | |
| 4 | G | R | -1.7469 | |
| 5 | H | R | -1.7378 | |
| 6 | F | R | 0.0000 | |
| 7 | G | R | -0.8879 | |
| 1 | F | S | 0.7686 | |
| 2 | F | S | 0.0000 | |
| 3 | K | S | -1.7371 | |
| 4 | G | S | -1.8218 | |
| 5 | H | S | -1.8573 | |
| 6 | F | S | 0.0000 | |
| 7 | G | S | -1.0279 | |
| 1 | F | T | 0.9320 | |
| 2 | F | T | 0.0000 | |
| 3 | K | T | -1.9527 | |
| 4 | G | T | 0.0000 | |
| 5 | H | T | -2.0116 | |
| 6 | F | T | 0.0000 | |
| 7 | G | T | -1.0259 |