Project name: 46f0de4f91ba100

Status: done

Started: 2026-02-12 15:32:05
Settings
Chain sequence(s) A: FFKGHFG
C: FFKGHFG
B: FFKGHFG
E: FFKGHFG
D: FFKGHFG
G: FFKGHFG
F: FFKGHFG
I: FFKGHFG
H: FFKGHFG
K: FFKGHFG
J: FFKGHFG
M: FFKGHFG
L: FFKGHFG
O: FFKGHFG
N: FFKGHFG
Q: FFKGHFG
P: FFKGHFG
S: FFKGHFG
R: FFKGHFG
T: FFKGHFG
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:09:31)
[INFO]       Main:     Simulation completed successfully.                                          (00:09:36)
Show buried residues

Minimal score value
-2.3526
Maximal score value
2.6186
Average score
-0.5068
Total score value
-70.948

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 F A 1.2437
2 F A 0.0000
3 K A -1.9372
4 G A 0.0000
5 H A -1.8042
6 F A 0.0000
7 G A -0.9048
1 F B 1.9558
2 F B 0.0000
3 K B -1.6913
4 G B -1.8000
5 H B -1.9550
6 F B 0.0000
7 G B -1.0428
1 F C 2.3160
2 F C 0.0000
3 K C -1.6717
4 G C 0.0000
5 H C -2.3526
6 F C 0.0000
7 G C -0.8279
1 F D 2.4659
2 F D 1.0005
3 K D -1.5762
4 G D -1.7873
5 H D -1.8740
6 F D 0.2211
7 G D -0.3155
1 F E 2.5978
2 F E 1.1134
3 K E -1.3113
4 G E -1.4487
5 H E -1.5231
6 F E 0.5173
7 G E -0.2173
1 F F 2.6186
2 F F 0.0000
3 K F -1.1360
4 G F -1.4870
5 H F -1.5376
6 F F 0.0000
7 G F -0.6328
1 F G 1.4315
2 F G 0.0000
3 K G -1.4633
4 G G -1.4791
5 H G -1.4736
6 F G 0.0000
7 G G -0.7909
1 F H 1.2762
2 F H 0.0000
3 K H -1.4492
4 G H 0.0000
5 H H -1.3201
6 F H 0.0000
7 G H -0.8493
1 F I 1.1385
2 F I 0.0000
3 K I -1.3573
4 G I -1.4332
5 H I -1.3552
6 F I 0.0000
7 G I -0.9178
1 F J 1.2294
2 F J 0.0000
3 K J -1.2897
4 G J -1.3086
5 H J -1.3043
6 F J 0.0000
7 G J -0.8365
1 F K 1.4498
2 F K 0.0000
3 K K -1.3673
4 G K -1.4634
5 H K -1.3264
6 F K 0.0000
7 G K -0.8172
1 F L 1.2850
2 F L 0.0000
3 K L -1.5066
4 G L -1.7102
5 H L -1.5288
6 F L 0.0000
7 G L -0.9435
1 F M 1.5326
2 F M 0.0000
3 K M -1.5480
4 G M -1.6862
5 H M -1.5042
6 F M 0.0000
7 G M -0.5522
1 F N 0.9361
2 F N 0.0000
3 K N -2.0870
4 G N 0.0000
5 H N -2.0538
6 F N 0.0000
7 G N -0.6797
1 F O 1.9462
2 F O 0.1871
3 K O -1.7535
4 G O -1.3177
5 H O -1.2978
6 F O 0.3887
7 G O -0.2486
1 F P 1.5478
2 F P 0.0000
3 K P -2.0765
4 G P -1.5718
5 H P -1.7640
6 F P 0.0706
7 G P -0.3846
1 F Q 0.7891
2 F Q 0.0000
3 K Q -2.0210
4 G Q -1.9625
5 H Q -1.7172
6 F Q 0.0000
7 G Q -0.9222
1 F R 1.1108
2 F R 0.0000
3 K R -1.9369
4 G R -1.7469
5 H R -1.7378
6 F R 0.0000
7 G R -0.8879
1 F S 0.7686
2 F S 0.0000
3 K S -1.7371
4 G S -1.8218
5 H S -1.8573
6 F S 0.0000
7 G S -1.0279
1 F T 0.9320
2 F T 0.0000
3 K T -1.9527
4 G T 0.0000
5 H T -2.0116
6 F T 0.0000
7 G T -1.0259
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018