| Chain sequence(s) |
H: EVQLVESGGGEVQPGGSLKLSCVASGTDFSINFVRWYRQRPGKQREWVAGFTANGDTNYPDSMKGRFTISRDNAKNTVYLQINSLKSEDTAVYYCYMLDNWGQGTQVTVSS
input PDB |
| Selected Chain(s) | H |
| Distance of aggregation | 5 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | VA5H |
| Energy difference between WT (input) and mutated protein (by FoldX) | 0.915358 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with H chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] FoldX: Building mutant model (00:00:26)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:29)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:53)
[INFO] Main: Simulation completed successfully. (00:00:54)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | E | H | -1.7803 | |
| 2 | V | H | -0.3239 | |
| 3 | Q | H | -1.1589 | |
| 4 | L | H | 0.0000 | |
| 5 | A | H | 0.0018 | mutated: VA5H |
| 6 | E | H | -0.2507 | |
| 7 | S | H | -0.3190 | |
| 8 | G | H | -0.4544 | |
| 9 | G | H | -0.3622 | |
| 11 | G | H | -0.6555 | |
| 12 | E | H | -1.8371 | |
| 13 | V | H | -0.3376 | |
| 14 | Q | H | -1.1833 | |
| 15 | P | H | -0.6306 | |
| 16 | G | H | -0.5383 | |
| 17 | G | H | -0.3072 | |
| 18 | S | H | -0.2618 | |
| 19 | L | H | 0.0503 | |
| 20 | K | H | -1.3380 | |
| 21 | L | H | 0.0000 | |
| 22 | S | H | 0.0201 | |
| 23 | C | H | 0.0000 | |
| 24 | V | H | 1.2183 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -0.1534 | |
| 27 | G | H | -0.4835 | |
| 28 | T | H | -0.4259 | |
| 29 | D | H | -1.7941 | |
| 30 | F | H | 0.0000 | |
| 35 | S | H | -0.0805 | |
| 36 | I | H | 0.4519 | |
| 37 | N | H | -1.0595 | |
| 38 | F | H | 0.1724 | |
| 39 | V | H | 0.0000 | |
| 40 | R | H | -0.2103 | |
| 41 | W | H | 0.0000 | |
| 42 | Y | H | 0.2276 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -0.5666 | |
| 45 | R | H | -0.5770 | |
| 46 | P | H | -0.4204 | |
| 47 | G | H | -0.8110 | |
| 48 | K | H | -1.9995 | |
| 49 | Q | H | -1.6292 | |
| 50 | R | H | -1.0045 | |
| 51 | E | H | -0.3449 | |
| 52 | W | H | 0.2932 | |
| 53 | V | H | 0.0000 | |
| 54 | A | H | 0.0000 | |
| 55 | G | H | 0.0000 | |
| 56 | F | H | 0.2190 | |
| 57 | T | H | 0.0891 | |
| 58 | A | H | -0.3360 | |
| 59 | N | H | -1.3143 | |
| 63 | G | H | -0.8088 | |
| 64 | D | H | -1.8420 | |
| 65 | T | H | -0.4580 | |
| 66 | N | H | -0.7246 | |
| 67 | Y | H | 0.0597 | |
| 68 | P | H | -0.3606 | |
| 69 | D | H | -2.0217 | |
| 70 | S | H | -0.5291 | |
| 71 | M | H | 0.0000 | |
| 72 | K | H | -1.9120 | |
| 74 | G | H | -0.8394 | |
| 75 | R | H | -0.6086 | |
| 76 | F | H | 0.0000 | |
| 77 | T | H | -0.0258 | |
| 78 | I | H | 0.0000 | |
| 79 | S | H | -0.1630 | |
| 80 | R | H | -0.2846 | |
| 81 | D | H | -0.6177 | |
| 82 | N | H | -1.3571 | |
| 83 | A | H | -0.4684 | |
| 84 | K | H | -1.7314 | |
| 85 | N | H | -0.7043 | |
| 86 | T | H | 0.0000 | |
| 87 | V | H | 0.0000 | |
| 88 | Y | H | 0.3722 | |
| 89 | L | H | 0.0000 | |
| 90 | Q | H | -0.6966 | |
| 91 | I | H | 0.0000 | |
| 92 | N | H | -0.6658 | |
| 93 | S | H | -0.3350 | |
| 94 | L | H | 0.0000 | |
| 95 | K | H | -1.5530 | |
| 96 | S | H | -0.6617 | |
| 97 | E | H | -1.8319 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.0134 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.4700 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.1259 | |
| 104 | C | H | 0.0000 | |
| 105 | Y | H | 0.1999 | |
| 106 | M | H | 0.0000 | |
| 107 | L | H | 0.6206 | |
| 116 | D | H | -1.6902 | |
| 117 | N | H | -0.6336 | |
| 118 | W | H | 0.3169 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.2237 | |
| 121 | G | H | -0.3404 | |
| 122 | T | H | -0.1544 | |
| 123 | Q | H | -0.5873 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | -0.2436 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.1290 | |
| 128 | S | H | -0.2295 |