Project name: VQIVY

Status: done

Started: 2026-03-05 16:00:48
Settings
Chain sequence(s) A: VQIIVYK
B: VQIVYK
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:08)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:09)
Show buried residues

Minimal score value
-0.6204
Maximal score value
2.5937
Average score
1.344
Total score value
16.1278

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 1.6757
2 Q A 0.7177
3 I A 2.5937
4 V A 2.3528
5 Y A 1.6541
6 K A -0.6204
1 V B 1.6511
2 Q B 0.5995
3 I B 2.1742
4 V B 2.2206
5 Y B 1.5981
6 K B -0.4893
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Laboratory of Theory of Biopolymers 2018