| Chain sequence(s) |
A: GPPGPPGFPGERGPPGPPGPP
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:07)
[INFO] Main: Simulation completed successfully. (00:00:08)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 2 | G | A | -0.7095 | |
| 3 | P | A | -0.7480 | |
| 4 | P | A | -0.8042 | |
| 5 | G | A | -0.9604 | |
| 6 | P | A | -0.5812 | |
| 7 | P | A | -0.3410 | |
| 8 | G | A | 0.0996 | |
| 9 | F | A | 1.1688 | |
| 10 | P | A | -0.3599 | |
| 11 | G | A | -1.5739 | |
| 12 | E | A | -2.9196 | |
| 13 | R | A | -3.1941 | |
| 14 | G | A | -2.1306 | |
| 15 | P | A | -1.4049 | |
| 16 | P | A | -1.0329 | |
| 17 | G | A | -0.9650 | |
| 18 | P | A | -0.8412 | |
| 19 | P | A | -0.8362 | |
| 20 | G | A | -0.9046 | |
| 21 | P | A | -0.6939 | |
| 22 | P | A | -0.5200 |