Project name: obj1 [mutate: SR25C, QN39C, GD44C, LH45C]

Status: done

Started: 2025-02-10 14:51:22
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Chain sequence(s) C: EVQLVESGGGLVQPGGSLRLSCAASDFTFRSYEMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAIYYCARLRDGFNKGFDYWGQGTLVTVSS
input PDB
Selected Chain(s) C
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues GD44C,LH45C,QN39C,SR25C
Energy difference between WT (input) and mutated protein (by FoldX) -0.164358 kcal/mol
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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with C chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:24)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:41)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:06)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:06)
Show buried residues

Minimal score value
-3.3296
Maximal score value
1.8377
Average score
-0.7782
Total score value
-93.3893

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E C -2.2237
2 V C -1.4012
3 Q C -1.8203
4 L C 0.0000
5 V C 0.1825
6 E C 0.1372
7 S C -0.4460
8 G C -0.8149
9 G C 0.0276
10 G C 0.9366
11 L C 1.4406
12 V C -0.0385
13 Q C -1.3371
14 P C -1.4887
15 G C -1.4134
16 G C -0.9785
17 S C -1.2309
18 L C -0.9630
19 R C -2.1462
20 L C 0.0000
21 S C -0.5691
22 C C 0.0000
23 A C -0.6495
24 A C 0.0000
25 R C -1.8559 mutated: SR25C
26 D C 0.0000
27 F C 1.1474
28 T C 0.0410
29 F C 0.0000
30 R C -2.0325
31 S C -0.8863
32 Y C -1.2160
33 E C -1.1424
34 M C 0.0000
35 S C 0.0000
36 W C 0.0000
37 V C 0.0000
38 R C 0.0000
39 N C -1.2549 mutated: QN39C
40 A C -1.5427
41 P C -1.4346
42 G C -1.8941
43 K C -3.1806
44 D C -3.3078 mutated: GD44C
45 H C -2.1825 mutated: LH45C
46 E C -1.6380
47 W C -0.0967
48 V C 0.0000
49 S C 0.0000
50 A C 0.0000
51 I C 0.0000
52 S C -0.5831
53 G C -1.2447
54 S C -1.2286
55 G C -1.0817
56 G C -0.7345
57 S C -0.3025
58 T C 0.1989
59 Y C 0.6077
60 Y C -0.3558
61 A C -1.1372
62 D C -2.3439
63 S C -1.7142
64 V C 0.0000
65 K C -2.3844
66 G C -1.6174
67 R C 0.0000
68 F C 0.0000
69 T C -0.6722
70 I C 0.0000
71 S C -0.5624
72 R C -1.3626
73 D C -1.9805
74 N C -2.1901
75 S C -1.7905
76 K C -2.3193
77 N C -1.9949
78 T C 0.0000
79 L C 0.0000
80 Y C -0.6718
81 L C 0.0000
82 Q C -1.2337
83 M C 0.0000
84 N C -1.3327
85 S C -1.2322
86 L C 0.0000
87 R C -2.4721
88 A C -1.8894
89 E C -2.3444
90 D C 0.0000
91 T C -0.3727
92 A C 0.0000
93 I C 1.0106
94 Y C 0.0000
95 Y C 0.4048
96 C C 0.0000
97 A C 0.0000
98 R C 0.0000
99 L C 0.0000
100 R C -3.1827
101 D C -3.3296
102 G C -2.0833
103 F C -1.2274
104 N C -2.4248
105 K C -3.1791
106 G C -1.8945
107 F C -0.9752
108 D C -1.1083
109 Y C -0.2406
110 W C 0.4633
111 G C -0.1598
112 Q C -0.9227
113 G C 0.1184
114 T C 0.5998
115 L C 1.8377
116 V C 0.0000
117 T C 0.3552
118 V C 0.0000
119 S C -0.7749
120 S C -1.0602
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Laboratory of Theory of Biopolymers 2018