Chain sequence(s) |
C: EVQLVESGGGLVQPGGSLRLSCAASDFTFRSYEMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAIYYCARLRDGFNKGFDYWGQGTLVTVSS
input PDB |
Selected Chain(s) | C |
Distance of aggregation | 10 Å |
FoldX usage | Yes |
Dynamic mode | No |
Automated mutations | No |
Mutated residues | GD44C,LH45C,QN39C,SR25C |
Energy difference between WT (input) and mutated protein (by FoldX) | -0.164358 kcal/mol |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:00) [INFO] runJob: Starting aggrescan3d job on: input.pdb with C chain(s) selected (00:00:00) [INFO] runJob: Creating pdb object from: input.pdb (00:00:00) [INFO] FoldX: Starting FoldX energy minimalization (00:00:00) [INFO] FoldX: Building mutant model (00:00:24) [INFO] FoldX: Starting FoldX energy minimalization (00:00:41) [INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:06) [INFO] Main: Simulation completed successfully. (00:01:06) |
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan3D score | mutation |
---|---|---|---|---|
residue index | residue name | chain | Aggrescan3D score | |
1 | E | C | -2.2237 | |
2 | V | C | -1.4012 | |
3 | Q | C | -1.8203 | |
4 | L | C | 0.0000 | |
5 | V | C | 0.1825 | |
6 | E | C | 0.1372 | |
7 | S | C | -0.4460 | |
8 | G | C | -0.8149 | |
9 | G | C | 0.0276 | |
10 | G | C | 0.9366 | |
11 | L | C | 1.4406 | |
12 | V | C | -0.0385 | |
13 | Q | C | -1.3371 | |
14 | P | C | -1.4887 | |
15 | G | C | -1.4134 | |
16 | G | C | -0.9785 | |
17 | S | C | -1.2309 | |
18 | L | C | -0.9630 | |
19 | R | C | -2.1462 | |
20 | L | C | 0.0000 | |
21 | S | C | -0.5691 | |
22 | C | C | 0.0000 | |
23 | A | C | -0.6495 | |
24 | A | C | 0.0000 | |
25 | R | C | -1.8559 | mutated: SR25C |
26 | D | C | 0.0000 | |
27 | F | C | 1.1474 | |
28 | T | C | 0.0410 | |
29 | F | C | 0.0000 | |
30 | R | C | -2.0325 | |
31 | S | C | -0.8863 | |
32 | Y | C | -1.2160 | |
33 | E | C | -1.1424 | |
34 | M | C | 0.0000 | |
35 | S | C | 0.0000 | |
36 | W | C | 0.0000 | |
37 | V | C | 0.0000 | |
38 | R | C | 0.0000 | |
39 | N | C | -1.2549 | mutated: QN39C |
40 | A | C | -1.5427 | |
41 | P | C | -1.4346 | |
42 | G | C | -1.8941 | |
43 | K | C | -3.1806 | |
44 | D | C | -3.3078 | mutated: GD44C |
45 | H | C | -2.1825 | mutated: LH45C |
46 | E | C | -1.6380 | |
47 | W | C | -0.0967 | |
48 | V | C | 0.0000 | |
49 | S | C | 0.0000 | |
50 | A | C | 0.0000 | |
51 | I | C | 0.0000 | |
52 | S | C | -0.5831 | |
53 | G | C | -1.2447 | |
54 | S | C | -1.2286 | |
55 | G | C | -1.0817 | |
56 | G | C | -0.7345 | |
57 | S | C | -0.3025 | |
58 | T | C | 0.1989 | |
59 | Y | C | 0.6077 | |
60 | Y | C | -0.3558 | |
61 | A | C | -1.1372 | |
62 | D | C | -2.3439 | |
63 | S | C | -1.7142 | |
64 | V | C | 0.0000 | |
65 | K | C | -2.3844 | |
66 | G | C | -1.6174 | |
67 | R | C | 0.0000 | |
68 | F | C | 0.0000 | |
69 | T | C | -0.6722 | |
70 | I | C | 0.0000 | |
71 | S | C | -0.5624 | |
72 | R | C | -1.3626 | |
73 | D | C | -1.9805 | |
74 | N | C | -2.1901 | |
75 | S | C | -1.7905 | |
76 | K | C | -2.3193 | |
77 | N | C | -1.9949 | |
78 | T | C | 0.0000 | |
79 | L | C | 0.0000 | |
80 | Y | C | -0.6718 | |
81 | L | C | 0.0000 | |
82 | Q | C | -1.2337 | |
83 | M | C | 0.0000 | |
84 | N | C | -1.3327 | |
85 | S | C | -1.2322 | |
86 | L | C | 0.0000 | |
87 | R | C | -2.4721 | |
88 | A | C | -1.8894 | |
89 | E | C | -2.3444 | |
90 | D | C | 0.0000 | |
91 | T | C | -0.3727 | |
92 | A | C | 0.0000 | |
93 | I | C | 1.0106 | |
94 | Y | C | 0.0000 | |
95 | Y | C | 0.4048 | |
96 | C | C | 0.0000 | |
97 | A | C | 0.0000 | |
98 | R | C | 0.0000 | |
99 | L | C | 0.0000 | |
100 | R | C | -3.1827 | |
101 | D | C | -3.3296 | |
102 | G | C | -2.0833 | |
103 | F | C | -1.2274 | |
104 | N | C | -2.4248 | |
105 | K | C | -3.1791 | |
106 | G | C | -1.8945 | |
107 | F | C | -0.9752 | |
108 | D | C | -1.1083 | |
109 | Y | C | -0.2406 | |
110 | W | C | 0.4633 | |
111 | G | C | -0.1598 | |
112 | Q | C | -0.9227 | |
113 | G | C | 0.1184 | |
114 | T | C | 0.5998 | |
115 | L | C | 1.8377 | |
116 | V | C | 0.0000 | |
117 | T | C | 0.3552 | |
118 | V | C | 0.0000 | |
119 | S | C | -0.7749 | |
120 | S | C | -1.0602 |