Project name: query_structure

Status: done

Started: 2026-03-16 23:17:24
Settings
Chain sequence(s) A: PGCCNGPKGCSSKWCRDHARCC
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:12)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:13)
Show buried residues

Minimal score value
-3.1755
Maximal score value
0.0
Average score
-1.593
Total score value
-35.0465

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 P A -0.6146
2 G A -1.2290
3 C A -1.1328
4 C A -1.0071
5 N A -1.6429
6 G A -1.5558
7 P A -1.4752
8 K A -2.2994
9 G A -1.6406
10 C A -1.5949
11 S A -1.4428
12 S A -1.6292
13 K A -2.5800
14 W A -1.0204
15 C A 0.0000
16 R A -3.1755
17 D A -3.1224
18 H A -2.3434
19 A A -1.8467
20 R A -2.1462
21 C A -0.6030
22 C A -0.9446
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Laboratory of Theory of Biopolymers 2018