Project name: 47a53adef99a8e8

Status: done

Started: 2026-01-20 04:03:42
Settings
Chain sequence(s) A: SYELTQPPSVSVAPGQTARISCSGDNIGGTFVSWYQQKPGQAPVLVIYDDNDRPSGIPERFSGSNSGNTATLTISGTQAEDEADYYCGTWDMVTNNVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPT
H: QVQLVESGGGLVQPGGSLRLSCAASGFTFNSYWINWVRQAPGKGLEWVSGIAYDSSNTLYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARGLGAFHWDMQPDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP
B: QVQLVESGGGLVQPGGSLRLSCAASGFTFNSYWINWVRQAPGKGLEWVSGIAYDSSNTLYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARGLGAFHWDMQPDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP
L: SYELTQPPSVSVAPGQTARISCSGDNIGGTFVSWYQQKPGQAPVLVIYDDNDRPSGIPERFSGSNSGNTATLTISGTQAEDEADYYCGTWDMVTNNVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPT
input PDB
Selected Chain(s) A,H,B,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:10:22)
[INFO]       Main:     Simulation completed successfully.                                          (00:10:36)
Show buried residues

Minimal score value
-3.3148
Maximal score value
2.1926
Average score
-0.6633
Total score value
-573.1018

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 S L -0.3904
2 Y L -0.9799
3 E L -2.1094
4 L L 0.0000
5 T L -0.7650
6 Q L -0.6713
7 P L -0.5020
8 P L -0.6925
9 S L -0.5965
10 V L -0.5733
11 S L -0.3699
12 V L 0.0000
13 A L -0.4134
14 P L -0.9723
15 G L -1.6102
16 Q L -2.0359
17 T L -1.5901
18 A L 0.0000
19 R L -2.0386
20 I L 0.0000
21 S L -0.7908
22 C L 0.0000
23 S L -1.5550
24 G L -2.3322
25 D L -3.3148
26 N L -3.0348
27 I L 0.0000
28 G L -1.5585
29 G L -1.0662
30 T L 0.1504
31 F L 1.3611
32 V L 0.0000
33 S L 0.0000
34 W L 0.0000
35 Y L 0.0000
36 Q L -0.1954
37 Q L -0.7594
38 K L -1.4730
39 P L -1.4792
40 G L -1.4752
41 Q L -1.7837
42 A L -0.7553
43 P L 0.0000
44 V L 1.3526
45 L L 0.0000
46 V L 0.0000
47 I L 0.0000
48 Y L -0.7525
49 D L -0.7998
50 D L -1.1029
51 N L -2.1706
52 D L -2.4028
53 R L -2.0746
54 P L -0.7871
55 S L -0.9085
56 G L -0.8139
57 I L -0.5923
58 P L -1.1971
59 E L -2.1783
60 R L -1.4190
61 F L 0.0000
62 S L -1.5192
63 G L -1.4670
64 S L -1.0771
65 N L -1.0692
66 S L -1.2953
67 G L -2.1144
68 N L -2.8002
69 T L -1.5327
70 A L 0.0000
71 T L -0.8706
72 L L 0.0000
73 T L -0.9741
74 I L 0.0000
75 S L -1.5354
76 G L -1.4658
77 T L 0.0000
78 Q L -1.8518
79 A L -1.2193
80 E L -2.0696
81 D L 0.0000
82 E L -1.3729
83 A L 0.0000
84 D L -1.1128
85 Y L 0.0000
86 Y L 0.0000
87 C L 0.0000
88 G L 0.0000
89 T L 0.0000
90 W L 1.1148
91 D L 1.2869
92 M L 1.9197
93 V L 2.1926
94 T L 0.6453
95 N L 0.9476
96 N L 0.0000
97 V L -0.0763
98 F L -0.3033
99 G L 0.0000
100 G L -1.2382
101 G L 0.0000
102 T L 0.0000
103 K L -1.1245
104 L L 0.0000
105 T L -0.2736
106 V L 0.0000
107 L L 0.7579
108 G L -0.5560
109 Q L -1.3188
110 P L -1.2738
111 K L -2.1054
112 A L -1.3750
113 A L -0.8770
114 P L 0.0000
115 S L -0.4714
116 V L 0.0000
117 T L -0.5883
118 L L 0.0000
119 F L 0.0000
120 P L -0.1418
121 P L 0.0000
122 S L -0.8679
123 S L -1.3935
124 E L -2.1652
125 E L 0.0000
126 L L -1.7804
127 Q L -2.1837
128 A L -1.7327
129 N L -2.4523
130 K L -2.2425
131 A L 0.0000
132 T L 0.0000
133 L L 0.0000
134 V L 0.0000
135 C L 0.0000
136 L L 0.0000
137 I L 0.0000
138 S L -0.7845
139 D L -1.6424
140 F L 0.0000
141 Y L -1.6302
142 P L -1.2874
143 G L -1.0662
144 A L -0.2969
145 V L -0.1575
146 T L -0.1033
147 V L 0.1515
148 A L -0.3753
149 W L 0.0000
150 K L -1.0346
151 A L 0.0000
152 D L -1.2912
153 S L -0.7125
154 S L -0.6272
155 P L -0.8378
156 V L -0.7960
157 K L -1.6155
158 A L -0.7439
159 G L -0.5408
160 V L -0.3026
161 E L -0.3227
162 T L 0.0492
163 T L 0.0218
164 T L -0.2256
165 P L -0.6093
166 S L -1.2080
167 K L -2.5088
168 Q L -2.1457
169 S L -1.7806
170 N L -2.3696
171 N L -2.8002
172 K L -2.4641
173 Y L -1.5614
174 A L 0.0000
175 A L 0.0000
176 S L 0.0000
177 S L 0.0000
178 Y L 0.0000
179 L L 0.0000
180 S L -0.3377
181 L L -0.9748
182 T L -1.6959
183 P L -2.3168
184 E L -3.1405
185 Q L -2.6151
186 W L 0.0000
187 K L -3.2174
188 S L -2.4959
189 H L -2.5017
190 R L -2.6283
191 S L -1.5151
192 Y L 0.0000
193 S L 0.0000
194 C L 0.0000
195 Q L -0.7957
196 V L 0.0000
197 T L -0.6259
198 H L 0.0000
199 E L -2.2747
200 G L -1.4522
201 S L -0.8246
202 T L -0.6054
203 V L -0.4344
204 E L -1.4996
205 K L -1.3364
206 T L -0.7190
207 V L -0.2606
208 A L -0.8234
209 P L -1.0557
210 T L -0.5659
1 Q H -1.5235
2 V H -0.8798
3 Q H -1.1823
4 L H 0.0000
5 V H 0.1994
6 E H 0.0000
7 S H -0.0025
8 G H 0.0000
9 G H 0.1710
10 G H 0.3097
11 L H 0.1755
12 V H -0.6721
13 Q H -1.5679
14 P H -1.6782
15 G H -1.3451
16 G H -1.1527
17 S H -1.2601
18 L H 0.0000
19 R H -1.5161
20 L H 0.0000
21 S H -0.2854
22 C H 0.0000
23 A H -0.2954
24 A H 0.0000
25 S H -0.9775
26 G H -1.0724
27 F H -0.5756
28 T H -0.5559
29 F H 0.0000
30 N H -1.8803
31 S H -0.6419
32 Y H -0.0293
33 W H 0.0000
34 I H 0.0000
35 N H 0.0000
36 W H 0.0000
37 V H 0.0000
38 R H 0.0000
39 Q H -0.6668
40 A H -1.0467
41 P H -0.8603
42 G H -1.5063
43 K H -2.2638
44 G H -1.4540
45 L H 0.0000
46 E H -0.9128
47 W H 0.0000
48 V H 0.0000
49 S H 0.0000
50 G H 0.0000
51 I H 0.0000
52 A H 0.0000
53 Y H -0.6728
54 D H -1.4966
55 S H -1.2592
56 S H -0.9253
57 N H -1.0083
58 T H -0.2800
59 L H -0.3225
60 Y H -0.7843
61 A H -1.3453
62 D H -2.4024
63 S H -1.7216
64 V H 0.0000
65 K H -2.5332
66 G H -1.7437
67 R H -1.2837
68 F H 0.0000
69 T H -0.7492
70 I H 0.0000
71 S H -0.4613
72 R H -1.1853
73 D H -1.6437
74 N H -2.0289
75 S H -1.5603
76 K H -2.0096
77 N H -1.6930
78 T H -1.0657
79 L H 0.0000
80 Y H -0.3972
81 L H 0.0000
82 Q H -1.0430
83 M H 0.0000
84 N H -1.4147
85 S H -1.2741
86 L H 0.0000
87 R H -2.1960
88 A H -1.7080
89 E H -2.1843
90 D H 0.0000
91 T H -0.5385
92 A H 0.0000
93 V H 0.6017
94 Y H 0.0000
95 Y H 0.0000
96 C H 0.0000
97 A H 0.0000
98 R H 0.0000
99 G H 0.0000
100 L H 0.5060
101 G H 0.4405
102 A H 0.3625
103 F H 0.8708
104 H H 0.6988
105 W H 1.4904
106 D H 0.6570
107 M H 0.0000
108 Q H 0.0000
109 P H 0.0000
110 D H 0.6440
111 Y H 1.0238
112 W H 0.3035
113 G H 0.0000
114 Q H -1.3127
115 G H -0.2704
116 T H 0.4950
117 L H 1.2584
118 V H 0.0000
119 T H -0.0952
120 V H 0.0000
121 S H -0.9738
122 S H -0.8596
123 A H -0.6049
124 S H -0.7572
125 T H -0.8728
126 K H -1.5206
127 G H -1.0307
128 P H 0.0000
129 S H -0.3184
130 V H 0.0000
131 F H 0.0000
132 P H -0.9230
133 L H 0.0000
134 A H -0.8596
135 P H 0.0000
136 S H -0.9976
137 S H -1.2328
138 K H -2.0756
139 S H -1.3030
140 T H -1.0130
141 S H -0.8363
142 G H -0.8153
143 G H -0.8552
144 T H -0.7040
145 A H -0.7044
146 A H -0.3872
147 L H 0.0000
148 G H 0.0000
149 C H 0.0000
150 L H 0.0000
151 V H 0.0000
152 K H 0.0000
153 D H -0.4253
154 Y H 0.0000
155 F H 0.0000
156 P H 0.0000
157 E H -0.5644
158 P H -0.6078
159 V H -0.2910
160 T H -0.2448
161 V H -0.2074
162 S H -0.3312
163 W H 0.0000
164 N H -0.7038
165 S H -0.6358
166 G H -0.4677
167 A H -0.1840
168 L H 0.0810
169 T H -0.1489
170 S H -0.2217
171 G H -0.2555
172 V H 0.1932
173 H H -0.1387
174 T H -0.0197
175 F H 0.0000
176 P H -0.0361
177 A H 0.2238
178 V H 0.0000
179 L H 1.1493
180 Q H 0.3121
181 S H -0.0945
182 S H -0.1528
183 G H 0.0892
184 L H 0.0526
185 Y H 0.2952
186 S H 0.0000
187 L H 0.0000
188 S H 0.0000
189 S H 0.0000
190 V H 0.1501
191 V H 0.0000
192 T H -0.1616
193 V H 0.0000
194 P H -0.5808
195 S H -0.5661
196 S H -0.6654
197 S H -0.6322
198 L H -0.7828
199 G H -1.1713
200 T H -0.7767
201 Q H -1.4499
202 T H -1.1167
203 Y H 0.0000
204 I H -0.9435
205 C H 0.0000
206 N H -1.1519
207 V H 0.0000
208 N H -0.7583
209 H H 0.0000
210 K H -0.7288
211 P H 0.0000
212 S H -0.6243
213 N H -0.5698
214 T H -0.5958
215 K H -0.9052
216 V H -0.7863
217 D H -2.1176
218 K H -1.7912
219 K H -2.1006
220 V H 0.0000
221 E H -2.4097
222 P H -1.2041
1 S A -0.3579
2 Y A -1.0643
3 E A -2.1190
4 L A 0.0000
5 T A -0.7687
6 Q A -0.4721
7 P A -0.4316
8 P A -0.5746
9 S A -0.5872
10 V A -0.4246
11 S A -0.6398
12 V A 0.0000
13 A A -0.8554
14 P A -1.2376
15 G A -1.3790
16 Q A -1.8542
17 T A -1.4763
18 A A 0.0000
19 R A -2.0279
20 I A 0.0000
21 S A -0.8042
22 C A 0.0000
23 S A -1.5469
24 G A -2.3228
25 D A -3.2697
26 N A -2.8493
27 I A 0.0000
28 G A -1.7647
29 G A -1.3845
30 T A 0.0000
31 F A 0.0000
32 V A 0.0000
33 S A 0.0000
34 W A 0.0000
35 Y A 0.0000
36 Q A 0.0000
37 Q A -0.9520
38 K A -1.7489
39 P A -1.5152
40 G A -1.5231
41 Q A -1.9256
42 A A -0.9148
43 P A 0.0000
44 V A 0.7647
45 L A 0.0000
46 V A 0.0000
47 I A 0.0000
48 Y A -0.7482
49 D A -1.1723
50 D A 0.0000
51 N A -2.1003
52 D A -1.9999
53 R A -1.7806
54 P A -0.8004
55 S A -0.8392
56 G A -0.7746
57 I A -0.5934
58 P A -1.1846
59 E A -2.1695
60 R A -1.4144
61 F A 0.0000
62 S A -1.4425
63 G A -1.2884
64 S A -0.9705
65 N A -1.0652
66 S A -1.1810
67 G A -2.0183
68 N A -2.6752
69 T A -1.4823
70 A A 0.0000
71 T A -0.8714
72 L A 0.0000
73 T A -1.0693
74 I A 0.0000
75 S A -1.4210
76 G A -1.2021
77 T A 0.0000
78 Q A -1.8185
79 A A -1.3696
80 E A -2.2942
81 D A 0.0000
82 E A -1.4893
83 A A 0.0000
84 D A -1.0255
85 Y A 0.0000
86 Y A 0.0000
87 C A 0.0000
88 G A 0.0000
89 T A 0.0000
90 W A 0.0000
91 D A 0.5395
92 M A 1.4483
93 V A 2.0202
94 T A 0.5524
95 N A 0.6186
96 N A 0.0000
97 V A -0.3231
98 F A -0.3218
99 G A 0.0000
100 G A -1.1777
101 G A 0.0000
102 T A 0.0000
103 K A -0.9108
104 L A 0.0000
105 T A 0.0000
106 V A 0.0000
107 L A -0.7129
108 G A -1.2916
109 Q A -1.8298
110 P A -1.6560
111 K A -2.4830
112 A A -1.5111
113 A A -0.8436
114 P A 0.0000
115 S A -0.6161
116 V A 0.0000
117 T A -0.5240
118 L A 0.0000
119 F A 0.0000
120 P A -0.1352
121 P A -0.3873
122 S A -0.7454
123 S A -1.2123
124 E A -1.7654
125 E A 0.0000
126 L A -1.7875
127 Q A -2.0722
128 A A -1.6749
129 N A -2.4291
130 K A -2.1621
131 A A 0.0000
132 T A 0.0000
133 L A 0.0000
134 V A 0.0000
135 C A 0.0000
136 L A 0.0000
137 I A 0.0000
138 S A -0.8188
139 D A -1.6296
140 F A 0.0000
141 Y A -1.6230
142 P A 0.0000
143 G A -1.0998
144 A A -0.3928
145 V A -0.1115
146 T A -0.1234
147 V A 0.0044
148 A A -0.4836
149 W A 0.0000
150 K A -0.9954
151 A A -1.3529
152 D A -2.0278
153 S A -1.0208
154 S A -0.8052
155 P A -0.8631
156 V A -0.7663
157 K A -1.6267
158 A A -0.8062
159 G A -0.6371
160 V A -0.6051
161 E A -0.6960
162 T A -0.1648
163 T A 0.0000
164 T A -0.7066
165 P A -0.6239
166 S A -1.2101
167 K A -2.5400
168 Q A -2.1006
169 S A -1.6054
170 N A -2.2021
171 N A -2.6489
172 K A -2.4879
173 Y A -1.6424
174 A A 0.0000
175 A A 0.0000
176 S A 0.0000
177 S A 0.0000
178 Y A 0.0000
179 L A 0.0000
180 S A -0.3598
181 L A -0.8365
182 T A -1.5439
183 P A -2.2182
184 E A -2.9760
185 Q A -2.3832
186 W A 0.0000
187 K A -2.7171
188 S A -2.2531
189 H A -2.5864
190 R A -2.8025
191 S A -1.7354
192 Y A 0.0000
193 S A -1.2341
194 C A 0.0000
195 Q A -1.0843
196 V A 0.0000
197 T A -0.6666
198 H A 0.0000
199 E A -2.3079
200 G A -1.4327
201 S A -0.8313
202 T A -0.6704
203 V A -0.7249
204 E A -2.2329
205 K A -2.0082
206 T A -1.2654
207 V A 0.0000
208 A A -0.8655
209 P A -0.9916
210 T A -0.4497
1 Q B -1.3737
2 V B -0.5658
3 Q B -0.8961
4 L B 0.0000
5 V B 0.6929
6 E B 0.0000
7 S B -0.3051
8 G B -0.6106
9 G B 0.1529
10 G B 0.6155
11 L B 1.3567
12 V B 0.0479
13 Q B -1.2930
14 P B -1.6738
15 G B -1.3689
16 G B -0.9431
17 S B -1.2143
18 L B -0.8152
19 R B -1.9306
20 L B 0.0000
21 S B -0.4128
22 C B 0.0000
23 A B -0.3189
24 A B 0.0000
25 S B -0.9266
26 G B -0.9539
27 F B -0.3411
28 T B -0.0318
29 F B 0.0000
30 N B -0.7394
31 S B -0.1364
32 Y B 0.1404
33 W B 0.0000
34 I B 0.0000
35 N B 0.0000
36 W B 0.0000
37 V B 0.0000
38 R B 0.0000
39 Q B -0.6789
40 A B -1.0529
41 P B -0.8131
42 G B -1.4985
43 K B -2.2755
44 G B -1.4412
45 L B 0.0000
46 E B -0.9085
47 W B 0.0000
48 V B 0.0000
49 S B 0.0000
50 G B 0.0000
51 I B 0.0000
52 A B 0.0000
53 Y B 0.0000
54 D B -0.9938
55 S B -0.8622
56 S B -0.6721
57 N B -0.6614
58 T B -0.1784
59 L B -0.2019
60 Y B -0.7699
61 A B -1.3301
62 D B -2.4451
63 S B -1.7321
64 V B 0.0000
65 K B -2.5446
66 G B -1.7400
67 R B -1.5782
68 F B 0.0000
69 T B -0.7707
70 I B 0.0000
71 S B -0.4467
72 R B -1.1870
73 D B -1.8571
74 N B -1.9650
75 S B -1.7683
76 K B -2.5051
77 N B -1.9804
78 T B 0.0000
79 L B 0.0000
80 Y B -0.5625
81 L B 0.0000
82 Q B -1.1186
83 M B 0.0000
84 N B -1.4601
85 S B -1.2675
86 L B 0.0000
87 R B -2.2432
88 A B -1.6938
89 E B -2.2075
90 D B 0.0000
91 T B -0.3325
92 A B 0.0000
93 V B 0.6590
94 Y B 0.0000
95 Y B 0.0000
96 C B 0.0000
97 A B 0.0000
98 R B 0.0000
99 G B 0.0000
100 L B 0.3572
101 G B 0.0713
102 A B 0.0512
103 F B 0.0056
104 H B -0.0790
105 W B 0.0000
106 D B -0.2600
107 M B 0.0000
108 Q B 0.0000
109 P B 0.0000
110 D B 0.5479
111 Y B 0.9456
112 W B 0.3560
113 G B 0.0000
114 Q B -1.2186
115 G B 0.0000
116 T B 0.4527
117 L B 1.4549
118 V B 0.0000
119 T B 0.0000
120 V B 0.0000
121 S B -0.6859
122 S B -0.7308
123 A B -0.5647
124 S B -0.6463
125 T B -0.8750
126 K B -1.1641
127 G B -1.3276
128 P B 0.0000
129 S B -0.1896
130 V B 0.0000
131 F B 0.0000
132 P B -0.9305
133 L B 0.0000
134 A B -0.7970
135 P B 0.0000
136 S B -1.1084
137 S B -1.2820
138 K B -1.9138
139 S B -1.1237
140 T B -0.9753
141 S B -0.8163
142 G B -0.7422
143 G B -0.6029
144 T B -0.5190
145 A B 0.0000
146 A B -0.1518
147 L B 0.0000
148 G B 0.0000
149 C B 0.0000
150 L B 0.0000
151 V B 0.0000
152 K B 0.0000
153 D B -0.4157
154 Y B 0.0000
155 F B 0.0000
156 P B -0.6796
157 E B -1.1527
158 P B -1.0202
159 V B -0.7287
160 T B -0.5278
161 V B -0.0837
162 S B -0.3364
163 W B 0.0000
164 N B -0.7791
165 S B -0.6866
166 G B -0.5028
167 A B -0.2077
168 L B 0.0684
169 T B -0.1403
170 S B -0.2065
171 G B -0.2608
172 V B 0.1284
173 H B -0.2436
174 T B -0.0792
175 F B 0.0000
176 P B -0.1124
177 A B -0.0986
178 V B 0.0000
179 L B 0.1601
180 Q B -0.2185
181 S B -0.3430
182 S B -0.3224
183 G B -0.1610
184 L B -0.2372
185 Y B 0.0000
186 S B 0.0000
187 L B 0.0000
188 S B 0.0000
189 S B 0.0000
190 V B 0.0000
191 V B 0.0000
192 T B -0.2231
193 V B 0.0000
194 P B -0.4853
195 S B -0.5189
196 S B -0.5690
197 S B -0.6011
198 L B -0.8223
199 G B -1.0964
200 T B -0.8026
201 Q B -1.3819
202 T B -1.2651
203 Y B 0.0000
204 I B -1.3894
205 C B 0.0000
206 N B -1.4256
207 V B 0.0000
208 N B -1.7190
209 H B 0.0000
210 K B -2.7779
211 P B -1.7475
212 S B -1.8439
213 N B -2.5961
214 T B -2.0224
215 K B -2.5648
216 V B -1.4885
217 D B -2.4611
218 K B -1.9455
219 K B -2.5336
220 V B 0.0000
221 E B -2.5157
222 P B -1.2488
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018