Project name: aggstab

Status: done

Started: 2026-04-21 04:19:12
Settings
Chain sequence(s) A: SKEAEFQAGKEAIENSTEDSAAFYENAGKFYAKYGENDLANEYFDKALSYPMSAEEKAKIEALKPK
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:34)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:35)
Show buried residues

Minimal score value
-3.4508
Maximal score value
0.0
Average score
-1.8931
Total score value
-124.9423

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 S A -2.1683
2 K A -3.3713
3 E A -3.4275
4 A A -2.6419
5 E A -3.4508
6 F A -2.7269
7 Q A -2.7258
8 A A -2.0877
9 G A -1.9437
10 K A -2.3111
11 E A -3.0904
12 A A -1.8527
13 I A -2.0772
14 E A -3.0448
15 N A -2.7921
16 S A -2.2525
17 T A -1.9056
18 E A -2.9843
19 D A -2.7017
20 S A -1.5556
21 A A -1.0238
22 A A -0.7162
23 F A -1.2637
24 Y A -1.6439
25 E A -1.6993
26 N A -1.4148
27 A A 0.0000
28 G A 0.0000
29 K A -1.5926
30 F A -1.1797
31 Y A 0.0000
32 A A -1.9200
33 K A -2.0603
34 Y A -1.8113
35 G A -1.7695
36 E A -2.1078
37 N A -3.2315
38 D A -3.2074
39 L A -2.0654
40 A A 0.0000
41 N A -3.2974
42 E A -3.3316
43 Y A 0.0000
44 F A 0.0000
45 D A -3.1434
46 K A -2.3288
47 A A 0.0000
48 L A -1.5807
49 S A -0.7867
50 Y A -0.3927
51 P A -0.2280
52 M A -0.6319
53 S A -1.3457
54 A A -1.7245
55 E A -3.1659
56 E A -3.1828
57 K A -2.7773
58 A A -2.5726
59 K A -3.1481
60 I A 0.0000
61 E A -2.8887
62 A A -1.3182
63 L A -0.7361
64 K A -2.2650
65 P A -2.1011
66 K A -2.1760
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Laboratory of Theory of Biopolymers 2018