| Chain sequence(s) |
A: PFTDVDCSVSKECWSVCKDLFGVDRGKCMGKKCRCYQ
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:00)
[INFO] Main: Simulation completed successfully. (00:01:00)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | P | A | 0.3409 | |
| 2 | F | A | 1.0344 | |
| 3 | T | A | 0.0000 | |
| 4 | D | A | -2.0767 | |
| 5 | V | A | -1.6418 | |
| 6 | D | A | -3.0131 | |
| 7 | C | A | 0.0000 | |
| 8 | S | A | -1.0739 | |
| 9 | V | A | -0.2347 | |
| 10 | S | A | -1.4858 | |
| 11 | K | A | -2.3026 | |
| 12 | E | A | -1.8326 | |
| 13 | C | A | 0.0000 | |
| 14 | W | A | -2.2460 | |
| 15 | S | A | -1.9017 | |
| 16 | V | A | -1.2471 | |
| 17 | C | A | 0.0000 | |
| 18 | K | A | -2.7305 | |
| 19 | D | A | -1.8411 | |
| 20 | L | A | 0.3581 | |
| 21 | F | A | -0.2908 | |
| 22 | G | A | -1.5160 | |
| 23 | V | A | -1.9836 | |
| 24 | D | A | -3.4770 | |
| 25 | R | A | -3.4003 | |
| 26 | G | A | 0.0000 | |
| 27 | K | A | -2.1255 | |
| 28 | C | A | -1.4702 | |
| 29 | M | A | -0.9900 | |
| 30 | G | A | -1.9214 | |
| 31 | K | A | -3.0845 | |
| 32 | K | A | -2.9288 | |
| 33 | C | A | 0.0000 | |
| 34 | R | A | -1.2409 | |
| 35 | C | A | 0.0000 | |
| 36 | Y | A | -0.9038 | |
| 37 | Q | A | -1.5775 |