Project name: query_structure

Status: done

Started: 2026-03-17 00:17:28
Settings
Chain sequence(s) A: PFTDVDCSVSKECWSVCKDLFGVDRGKCMGKKCRCYQ
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:00)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:00)
Show buried residues

Minimal score value
-3.477
Maximal score value
1.0344
Average score
-1.319
Total score value
-48.8045

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 P A 0.3409
2 F A 1.0344
3 T A 0.0000
4 D A -2.0767
5 V A -1.6418
6 D A -3.0131
7 C A 0.0000
8 S A -1.0739
9 V A -0.2347
10 S A -1.4858
11 K A -2.3026
12 E A -1.8326
13 C A 0.0000
14 W A -2.2460
15 S A -1.9017
16 V A -1.2471
17 C A 0.0000
18 K A -2.7305
19 D A -1.8411
20 L A 0.3581
21 F A -0.2908
22 G A -1.5160
23 V A -1.9836
24 D A -3.4770
25 R A -3.4003
26 G A 0.0000
27 K A -2.1255
28 C A -1.4702
29 M A -0.9900
30 G A -1.9214
31 K A -3.0845
32 K A -2.9288
33 C A 0.0000
34 R A -1.2409
35 C A 0.0000
36 Y A -0.9038
37 Q A -1.5775
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Laboratory of Theory of Biopolymers 2018