Project name: Ab1-42_caryophyllene_pocket1_50 ns

Status: done

Started: 2025-02-25 09:30:14
Settings
Chain sequence(s) A: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:35)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:35)
Show buried residues

Minimal score value
-3.1989
Maximal score value
2.7436
Average score
-0.4331
Total score value
-17.7577

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 D A -2.0149
2 A A -1.5346
3 E A -2.5574
4 F A -2.1137
5 R A -3.1989
6 H A -2.7782
7 D A -2.5065
8 S A -1.8772
9 G A 0.0000
10 Y A -1.0129
11 E A -2.3563
12 V A -1.5824
13 H A -1.6911
14 H A -1.5517
15 Q A -0.3479
16 K A -0.0005
17 L A 0.7211
18 V A 2.1324
19 F A 2.6470
20 F A 1.7998
21 A A 0.5100
22 E A -1.9539
23 D A -2.3406
24 V A 0.0000
25 G A -1.8515
26 S A -2.3401
27 N A -2.7785
28 K A -2.2127
29 G A -0.1668
30 A A 0.4502
31 I A 0.5974
32 I A 1.9097
33 G A 0.0000
34 L A 1.8251
35 M A 2.5984
36 V A 2.4092
37 G A 0.7503
38 G A 0.0000
39 V A 0.0000
40 V A 1.9164
41 I A 2.7436
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Laboratory of Theory of Biopolymers 2018